HsaINT0188278 @ hg19
Intron Retention
Gene
ENSG00000181220 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:21948]
Coordinates
chr7:149189950-149191161:-
Coord C1 exon
chr7:149191080-149191161
Coord A exon
chr7:149190064-149191079
Coord C2 exon
chr7:149189950-149190063
Length
1016 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
AACCTTCTGTCTTTCCTCAGACT
3' ss Score
10.58
Exon sequences
Seq C1 exon
GAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCACGTGATGAGGGGCAACTACGAGACGCTGGTCTCCCTGG
Seq A exon
GTAAGGCCTGACACTCATTTCTCTGTTAAATGGGATTTTGCAAGTCCTCAGAATTCTCCCTCCACATAGTTGTTTTCATGTCAGTGTTATATAAATCACCAGAAACATTGTTGACCTTGCAAGTTGTTACCTTTTGTGAAGGATGAGCCCTGGGTGATGGAGTTAAAAGCTCCCTTCTCCCTGTGTTGAGTTTCCCAGAATGCCAGTCTGGGAACGGCGGTGGCTTCTCTCCTACGCAGGCCCGGGATGTGGACCTTTCTGTTCTTGCTGACTTGGAGCGGGGAAGGCCCCATCTGCTCTCAGATCCAGTATGTAATTGACTCACATTTGAGAAAGACTCTTTCCTTCAGCCTTCTCCTACAAACATGCGTGGCCCTTACGGCAACATGCCTCGAGGTCAGTGGAGAACATGGGCAGACGGTGCTGCTTGCAGCAGACATTTTCTTCATGCCTCAAAACTTTGCTTCCCTCAGCCCCTGGGGCTACTGCTCTTCTCCTTGTTTAATCCTGCCCAGGAAGGGCCTGGACTCTGTTTCTTCCTGGGCTGGTTTTCTCTTCCTAATGGTTTCTGTGTGACCCCGGAGCCGAGGGCAGTGAGACCTGTTAGAGAGGGCAGGAGCAGGTGCAGACGTGAGGTTGTTTCGTCAGCACAAGTGCACTGCTGTTTAACGTGCACGCTCTGTGGCAGTTTCTTCACCCCGGCACTGTGGACATTTGGGACCAGGTGATTCTGTGTGTCGGCGGCATCCTCTGCATTGTAGGATGTTGAGCAGCAGCCCTGGCCTCTCAGGGCATCTCCAGATGCCAGTCACCTCTCCCCCAGCCCTGGGCATGACAACCAGAATTGTCTCCAGACTTTGCCAGATGCCCCCAGGGAGCAAAATTGCCTGTGGTTGAGAGCTACTGCTTTGTGACAATCAAGAGATTTCATTTCTAGACCATTGTTGGTTTTCCGGGATGACTGTCCCCAGCTTTGACTGGAACGTGGCAAAAACTAACCTTCTGTCTTTCCTCAG
Seq C2 exon
ACTACGCCATCTCCAAGCCCGAGGTCCTCTCCCAGATTGAACAAGGGAAGGAGCCCTGCAACTGGCGCCGCCCTGGCCCCAAGATTCCAGATGTTCCTGTGGACCCCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181220-ZNF746:NM_152557:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.615
Domain overlap (PFAM):
C1:
PF0135222=KRAB=FE(87.1=100)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGGGCAAGCTGGAGG
R:
CTGGGGTCCACAGGAACATCT
Band lengths:
191-1207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)