BtaINT0166032 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031106 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr4:113307642-113309373:-
Coord C1 exon
chr4:113309292-113309373
Coord A exon
chr4:113307756-113309291
Coord C2 exon
chr4:113307642-113307755
Length
1536 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ACCCTTCTGTTCTTCTTCAGACT
3' ss Score
10.84
Exon sequences
Seq C1 exon
GAGTGGGGCAAGCTGGACGAGTGGCAGAAGGAGCTGTACAAGCACGTGATGAGGGGCAACTATGAGACGCTGGTCTCCCTGG
Seq A exon
GTAAGGCATGCGATTCATTTCCTGGTTAAATGTGATTTAAGGAGGTCTCAGGGCTTCCCTGGTAGCTCAGCTGGTAAAGAATCCGCCTGCAACGCAGGAGACCCCAGTTCGATTCGTGGGTCAGGAAGATGCCCTGGAGAAGGGCTTGGCTACCCACTCCAGTATTCCTGAGCTTCCTTGACAGTAAAGAATCCACCTGCAATGTGGGAGACCTGGGTTCGATCCCTGGGTTTAGGAAGATCCCCTGGAGGAGGGCATGGCCACCCACTCCAGTATTCCTGCCTAGAGAATCCTCTTGGGCAGAGGAGCCTGGCGGGCTGCAGTCCATGGGGTCGCAAAGAGTCGGACACAACTGAGCGACTAAGCACAGACAGCACGGGGAGATCTCAACCTCTTTCTTGCTGCTGGTGGTTTTTTATCGCAAGGACACGTAAATCACTGGGACCCTTGACCATGGACAGTTATCTCCCTCCTCTTACTGAAGTTGAGCCCAGGGTGACTGAGTCAAAGGCTGTCTTCTGCCCAGTGAAGTTCACGGATTGCCAAACTGAGAGGCATAGCGACCCCTCTCCTAACCAGGCCCAGAGCACAGCCGTTTCTGTCTCTTGCTGAGTCCTGGAGCGGAGGAGGCTCCTCCACTTCTCAGATCTTGTACGATCAGTCCACGTTTGAGGAGTGCTTTTGCTCTCGCCTTCTCTTACTGAGACATGAGGCCTTGACCGAGGAGAGTATGGGCAGCCCAGGCTTCTCGCAGCCAGTGCTGCCCTCTTACCTGGCGGCTTCCCTGACCCTGGGCCTGCTGCCGCTACCCTCATGCAATACCCCCCAAGAAGGCCTGGACTGTTTCTTCTGGACTTACTACCTCTTCAGATGATGTCTGTGTGATCGCAGGTCTGAAGGCAACAAGGCGTGCTTATGAGGTGGGAGCAGGAACAGGTGTGAGGTTATATTCCGGTTTGCAGGAATGCACTGCTTCTTAGGGGCTTCCCTGGTGGCTCCGTGGTAGAGAACCCACCTGCCAGTGTAGGAGATGCAGTTGATCCCTGTGTTGGGAAGATCCCCTAGAGAAAGAAATGGTAACCCACTCCAGTATTCTTGCTGGGAGAATCTTATGGACAGAGAGGAGCCTGGAGGGCTACAGTCCACTGGGTCGCAAAGAGTTAGACACGGCTGAGCGACTAAACAACAACTGCTTCTTAACCCAGAGACCCTGTATCAACGTGTCTTATGCTCAGCACCGCATCTTGGGCCAGATGAGGCTTTGTTTTGGGGACCATCCTGGGCCTTGTAGGACGGCCATCAGCCTCTTGCCAGCGGATGCCAGCGGCACCTCTGCCCCGTCCCCAGTCTCGACAACCAAAAACATCTCCGACTCTGACCATTTTCCCCCTGGGAGACAGACTCACCTGTGCTTGAGAATCACTGCCCTGTACCAATCGAGAGGTGTGGTTTCTAGGCCATCTTGGTTTCCCGGGCTGCCTATCCCCACCTCTTAAGTGGAACGTGGCCAAAGCTAACCCTTCTGTTCTTCTTCAG
Seq C2 exon
ACTACGCCATCTCCAAGCCCGAGGTCCTCTCTCAGATTGAACAGGGGAAGGAGCCGTGCAGCTGGCGTCGTGCTGGCCCCAAGGTTCCAGATGTTCCCGTGGACCCGAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031106:ENSBTAT00000018668:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.538
Domain overlap (PFAM):
C1:
PF0135222=KRAB=FE(87.1=100)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGGGCAAGCTGGAC
R:
CTCGGGTCCACGGGAACATC
Band lengths:
191-1727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]