RnoINT0168629 @ rn6
Intron Retention
Gene
ENSRNOG00000007064 | Zfp746
Description
zinc finger protein 746 [Source:RGD Symbol;Acc:1306209]
Coordinates
chr4:77742750-77743746:-
Coord C1 exon
chr4:77743665-77743746
Coord A exon
chr4:77742864-77743664
Coord C2 exon
chr4:77742750-77742863
Length
801 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
AACCTCCTGTCTTTCCTCAGACT
3' ss Score
9.97
Exon sequences
Seq C1 exon
GAGTGGGGCAAGCTGGAAGACTGGCAGAAGGAGCTCTACAAGCATGTGATGAGGGGCAACTACGAGACACTGGTTTCCCTGG
Seq A exon
GTAAGCCTAACACACCTCTGGAAAGCATGATTTTACAAGTTCCAGACCTCCCTTTGTGATATGGTTGTTTTCATGACAGTCATATGCAGAGTCCTAGATAATTTGAGCAAGGAGATTCCTTTTCCCCCACCTTTCTGTCTTCCCACCTCATATTGTAAGGTAGAGTCAGATATTCCCTTCTGCTTGACGAAGTAGCAGACTGAGGAAAGTGGTGACCTCCGTTCTCACTAGGCCCAGAGAATTGACATCTCCAGTTTGGCTGAGACTGGAGTACAGGTGTGCTGGCAGCTCTGCAGTGTATTTTTAACCAACTCCACTTTAGCAAAGGAATTGTTCTCTTAACATGGATTGGATGGCTTTTATGTGACACAGCACAGGGTCTGTGATAATAGAGTAGACCTTGCCTCTCAAGACAGACGTTCTTTCTCTGCCCCAAAGCCCTGCTCCTCCCACCCCTGGAGCTACTGTTCTGAAAGACCCTCTTCTTAGTCTTCCTTCCTGGCCAAGAGTATTTGGTGGGATTCTGCTTTGCAGACATGCCTTGTCCAGCACCACCAGCTATGTGGACAGACGACTAGGGGGTAGGGTCTTTCACTTGCATTATTCATGTGCAATAGCACCTTTCCCACCCTCTGGACTCTACACAGGACTGCTCGAAGACTTTGAGGAGAATGCCTACCATTGATAACTGTTCTTCTGCACCACTCAAGACATTTAGTTTCTAGGCTGTTAGTGATTTTACTATTGCCTGTCCCAGCTCTGATGAGAATGTGGCAAGATTAACCTCCTGTCTTTCCTCAG
Seq C2 exon
ACTATGCCATCTCCAAACCCGAGGTCCTCTCCCAGATTGAACAAGGCAAGGAGCCATGCACCTGGCGTCGCACTGGCCCCAAGGTCCCGGAGGTTCCTGTGGACCCAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007064:ENSRNOT00000009247:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.615
Domain overlap (PFAM):
C1:
PF0135222=KRAB=FE(90.0=100)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGCAAGCTGGAAGAC
R:
GACTTGGGTCCACAGGAAC
Band lengths:
191-992
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]