MmuEX6004173 @ mm10
Exon Skipping
Gene
ENSMUSG00000057691 | Zfp746
Description
zinc finger protein 746 [Source:MGI Symbol;Acc:MGI:1916478]
Coordinates
chr6:48082154-48083605:-
Coord C1 exon
chr6:48083306-48083605
Coord A exon
chr6:48083093-48083174
Coord C2 exon
chr6:48082154-48082267
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCATGTATTTTTCTGATCAGGAG
3' ss Score
7.08
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
ATTTCTCCATGGACAATGGCAGCTACAATTCAGGCTATGGAGAGGAAGATTGAATCACAGGCTGCTCGACTGCTTTCTCTAGAAGGTCGAACTGGGATGGCAGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTCAGCAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGAACCCTGCTGCAGGAATATGGGCTGCTGCAGCGGCGGCTGGAAAATGTGGAGAATCTGCTACGCAACCGGAACTTCTGGATTCTTCGGCTTCCCCCAGGCAGCAAGGGCGAGGTCCCCAAG
Seq A exon
GAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCATGTGATGAGGGGCAACTACGAGACACTGGTCTCCCTGG
Seq C2 exon
ACTATGCCATCTCCAAACCTGAGGTCCTCTCCCAGATTGAACAAGGCAAGGAGCCATGCACCTGGCGTCGCACTGGGCCCAAGGTCCCGGAGGTTCCTGTGGACCCAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057691-'7-6,'7-3,8-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.060 C2=0.479
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=74.0),PF0135222=KRAB=PU(3.3=1.0)
A:
PF0135222=KRAB=FE(90.0=100)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCAGGAATATGGGCTG
R:
CCTTGCCTTGTTCAATCTGGGA
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types