RnoEX6013441 @ rn6
Exon Skipping
Gene
ENSRNOG00000007064 | Zfp746
Description
zinc finger protein 746 [Source:RGD Symbol;Acc:1306209]
Coordinates
chr4:77742750-77744175:-
Coord C1 exon
chr4:77743876-77744175
Coord A exon
chr4:77743665-77743746
Coord C2 exon
chr4:77742750-77742863
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGTTTCTCTGATCAGGAG
3' ss Score
9.84
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
ATTTCTCCATGGACAATGGCAGCTACAATTCAGGCTATGGAAAGGAAAATTGAATCACAGGCTGCTCGACTACTTTCTCTAGAAGGTCGAACTGGGATGGCGGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTCAGCAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGAACCCTGCTGCAGGAGTACGGCCTGCTGCAGCGGCGGCTGGAGAATGTGGAGAATCTGCTACGCAACCGAAACTTCTGGATCCTGCGGCTGCCCCCTGGCAGCAAGGGCGAGGTCCCCAAG
Seq A exon
GAGTGGGGCAAGCTGGAAGACTGGCAGAAGGAGCTCTACAAGCATGTGATGAGGGGCAACTACGAGACACTGGTTTCCCTGG
Seq C2 exon
ACTATGCCATCTCCAAACCCGAGGTCCTCTCCCAGATTGAACAAGGCAAGGAGCCATGCACCTGGCGTCGCACTGGCCCCAAGGTCCCGGAGGTTCCTGTGGACCCAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007064-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.071 C2=0.615
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=74.0),PF0135222=KRAB=PU(3.3=1.0)
A:
PF0135222=KRAB=FE(90.0=100)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCAGCTGGAGGGCAAG
R:
GAGGACCTCGGGTTTGGAGAT
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]