MmuALTD1028687-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000045466 | Zfp956
Description
zinc finger protein 956 [Source:MGI Symbol;Acc:MGI:2141515]
Coordinates
chr6:47955904-47957767:+
Coord C1 exon
chr6:47955904-47956030
Coord A exon
chr6:47956031-47956170
Coord C2 exon
chr6:47957667-47957767
Length
140 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
TCCTCCATGTATTTCCTCAGTGA
3' ss Score
6.89
Exon sequences
Seq C1 exon
GCAGTGGAAAAGAAAACAGAGTCCCAGGCTGTCCACCTTCAAAACTTGGAAGTAAGAACAGGGTCAGCTGAGAAGAAGTTGGCTGACTTCGAGAAGACGGCCATGGAGCTCAGCAGCCAGCTGGAGG
Seq A exon
GCAAGTGGGCTGTTCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAACGGCGGCTGGAGAACCTGGAGAATCAGATGCAAAACCGGAACCCCTGGGTCCTGAGGCTCCCCCCCAGCAGCAGGGATGAAGCCCCCAAG
Seq C2 exon
TGACTCTTGGATCTAAGAACCAGAGCAAATTGATCCTCTGCCTTCAAGCTGGTAGAAGGTATGATTCCCATCTTTAGAGTTAAGTGTAGACATGCTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045466-2-4,3-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=67.8)
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGAAAAGAAAACAGAGTCC
R:
TCAGAAGCATGTCTACACTTAACTCT
Band lengths:
228-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types