HsaINT0093511 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:148986639-148987129:+
Coord C1 exon
chr7:148986639-148986817
Coord A exon
chr7:148986818-148987028
Coord C2 exon
chr7:148987029-148987129
Length
211 bp
Sequences
Splice sites
5' ss Seq
TAGGTGACT
5' ss Score
3.75
3' ss Seq
TGCCCTTTTCCTCCCCACAGGCC
3' ss Score
14.27
Exon sequences
Seq C1 exon
AGGTTCCTCCTTCAGAAAAGGGTCCCAGTGTGCTGTGGGAGGCAGGGTGAGGAGGCTGTCCGGCCTCAGGCGAGGAAGGAGAAGCACGTGGAAGGAAGGGCAGCAGGAAGCCTGAGCCTGACTGCCATGGATGGCCAGACCCACTCTTGGGCCTCAGTTTCCTCATCTGTCTGGACTAG
Seq A exon
GTGACTTGTCTATGTGGGCAGTGGATGGGAACCCTTCCTCTTGGCCTCATGGCACTCACTTCTAGCCCACGAAAACTGAGAGGCCTTGCCCACCCTACTCTCCATGCCCCTCAACACACGCCTTGAAGAGGCTGCTCCAAGCCTAGCAGAACACCCTCCCTTTCCAGGCCTGCAGAGGACAGCCCTGCCACTGCCCTTTTCCTCCCCACAG
Seq C2 exon
GCCAGGCCACCACCAAGCCAGATCTGGCACCAGTGGAGAAAGGAGACAGGCAGGCAACTGCAGCCTGCCCAGTGCGGAGAGGGGCCAGAGCCCGGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
-LOC155060:NR_036573:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGAAAAGGGTCCCAGTGT
R:
CCTCTCCGCACTGGGCAG
Band lengths:
252-463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)