HsaALTD1054236-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr7:149282044-149287776:+
Coord C1 exon
chr7:149282044-149285496
Coord A exon
chr7:149285497-149285955
Coord C2 exon
chr7:149287565-149287776
Length
459 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
GAACTTGTGTCTGGTTGCAGGAC
3' ss Score
8.18
Exon sequences
Seq C1 exon
TGCGCTTGATCTGGTTTCTGCTCTCTGGGAGGTGAGTGGCCGTGCGGGGCGGTGGCAGCTGGCGACACCTGCGGGCTGTTGGGCACCAGCCCGGGGCGGGCGCTCGCACCTGTCGGGCGTGCACAAAGGCCCGGCGCACGCTGTGGGGGCGGGGCCTCCCGGGTTGGCCAATGAAAAGCTGGCACTGGGTCGGAGGCGCCAGCCAAGTGGGGGGCGGAGCTTCCACCACCGGCCAATGGGGATCTGGCTTCGGGATGTGGGCGGGGTCCACCCGGTCGCAACCCGTTGAGTCTCTGCACAGCTGCCGCGCTGACGCGTTTTCCGCGTGTCCCGAGCCCCGGCGGCCCCGCGAGCTCGGTCCGTGCGGGGAAAGCAGGGCTGACGCCGTCTGCGGAGAGGACTGCGCAGCCGGGCTTGTGTGGGGCCGCGCGTAACGGCAGCGGCTACTCCCTGCCCAGGCCGGCCAGCACAGGGCCATGGCCGAGGCGGCTGCGCCTCCG
Seq A exon
GTAAGGGCGACCCTCATGGAGGCTTGGGGACGTGGAGCCGAGTCCTGAATTCGCCAGGAGGATGTTCCACCCCCCACCATCTCCGGCGACCTCCTGGAACTGGGGAGGGCTCAGCCCGGGTGGCAGGAGGAGGACAAGGACTCCTAAGGCCACACGATAAACGCCCTTCTCGCTCTCCGTTTCCTTGCCTGTGGAATAAGGTGATTGGCAAACACAAGATTTGGAGGTTCCCTCCAGCCCTGATATCCACTGGACCCGGCTCTGGGGGGACAGTGGACTGTGGACGTCTTCATTCCAGACTCTCCAAGATTCCTCTTTCTGGACCCGCCTTTTGGCACCGCCCCCAAGTCGACCATCTCAAAGATCCACCCCTCCCTCCAAGCTGAGACCAGTGCCATGGCCTGGGGAGGGATGTCCGCTGCAGTCTGCTGGAGCCAGAGTCTGGCTCCTGGCTGTGAG
Seq C2 exon
GACTGGCATTGCGGACTGACCTCCAGGGAGAGGCCCAGATCTGATCTGCAGAGATCTCCCTTCCGGCTATCGTGGCTGCTGTTCAGGTGGTGGAGAAGAAGATGGAACCCCAGGCTGCCTGGCTACAGAGCCTGGAGGGATGCATGTGGACAGCCAAGAAGAAGCTGGCTGACTGCGAGAAGGTGGCTGTGGAGTTCGGGAACCAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-16-20,17-20,18-20-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.645 A=NA C2=0.436
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAATGGGGATCTGGCTTC
R:
CCTGAACAGCAGCCACGATAG
Band lengths:
356-815
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains