BtaINT0166090 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002445 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr4:113142239-113142614:+
Coord C1 exon
chr4:113142239-113142323
Coord A exon
chr4:113142324-113142485
Coord C2 exon
chr4:113142486-113142614
Length
162 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TCTCTGTACTCTGCACGCAGATT
3' ss Score
8.69
Exon sequences
Seq C1 exon
CCAGAGTGGGGCAAGCTGGACGAGTGGCAGAAGGAGCTGTACAAGCACGTGATGAGGGGCAACTACGAGATGCTGGTCTCCCTGG
Seq A exon
GTAAGGCTGTCTAGATGATGCTCTGGGCCCTGCCCACAGATGGGCCTCCTGCAGGCTGTGTCTCAGCTTTGGCTTCTGTTCCTCCAGGTGTCGCTGCGTCTCTGGGCACCTGGGTGGCGGGTGTCCAGTCTTGACCCAGCTCTCTCTGTACTCTGCACGCAG
Seq C2 exon
ATTATGCCATCTCCAAACCAGACATCCTCACCCGGATGGAGAGGGGAGAGGAGCCTTGTCCTGAAGGCCCGTGGGGCCGGGAGGAAGGGAACGAGAGAGAGGAAGTGTGCCCCAGGAGGCCAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002445:ENSBTAT00000003175:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.795
Domain overlap (PFAM):
C1:
PF0135222=KRAB=FE(93.3=100)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTGGGGCAAGCTGGA
R:
CTGCACCTGGCCTCCTGG
Band lengths:
213-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]