HsaINT0185564 @ hg38
Intron Retention
Gene
ENSG00000189420 | ZFP92
Description
ZFP92 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:12865]
Coordinates
chrX:153418673-153420332:+
Coord C1 exon
chrX:153418673-153418799
Coord A exon
chrX:153418800-153420227
Coord C2 exon
chrX:153420228-153420332
Length
1428 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
GCTTCATATTCCACGCCCAGGAT
3' ss Score
4.53
Exon sequences
Seq C1 exon
GTGCCAGTATCTTTTGAGGATGTGTCCGTGTACTTCACAAAGACAGAATGGAAGCTTCTGGACCTCAGACAAAAGGTCCTCTACAAGCGGGTGATGCTGGAGAACTATAGCCATTTGGTGTCACTGG
Seq A exon
GTAAGTGATCCCTCCACGACATACACACACCCAGTCCCACCTACTCTGTCTCTGGGCTCAGTTTATTTCCGAGATTCCTGTTTGTCGGTTGCTATGAGCCCAAGAATAAATGCATTTCTCCATCAGACCAGTAATGCCAGTAATCCATTGCAGGCCAGCCGCCATCTCAGTAGGATGGTTTTTAGCTAAGTGGTCTGGACCTGTAAATGTTTTAGGTAAATGCGTTGGCCTGTAAGTTTCAGTACCAGTCTTATCTTGTGTATAAAATCGTGGATCGACTAAAGGTCTTTCTACTCAAAAGAGAGATGCAAATTCTACTGGAATATTTATGTGCACTCTTTTAGACTTAATTCGTTTCTATGACGGCTGCATTTTGCATCCGTTCCACTTTGTAAAATTTAGCAACATCTTTTCCTTCCATTGACCAGGGAGGTCCCACATAAGGACAAAGTGTAGACTTGGATTTCAAGCCTTGAGAAGTCCCGGGAGGAGCTGGGGCAGCTTGGAGCACACTGCTCTCCCCCTTCCATGCCAGTGCACACCCACTGCCGGAAGGGGCAGCAATTTTGCCAATTAAAGGGCAAAAGCAGGAGTCACAGGCTAGACGGATGGGGGCCGGAGCACTCAGGAAGGTTTTCAGGTGGGGTAAAGAACGTCTGAGGGTGCCAGTGACTTGCCCCCACCTCACGCAGCTGATGAGAGATGCATGCGTGAAACAGAGTGGGACTGGGCCTCTGGCTTTTCCCCCAGTGTGCCCAGCAAGGCTGGCTGCTGCAGCTAAGCTCAGACACTCCACTTCCCAGTGGAAATGGAAACACTCCACTTCCCCTTGCCGCTGGAGGGGAAATCCAGAGGGTCTTCAACATTGCACTCTACTGCCTTTGGGGTTGTGGGAGTCTGACTCCACAGATTTTGCCTCTGTAATCTAGCCCCATAGAGGGAAAGCAGCTTCATCCCCTGGATTCCTTCTGACACTCACCAGGCAGACCTGGGGTTCCAGGGAGGGGTCTGGGATCCTCAGTGGAGTTGGATGATGAAACAGGGCAATTCAGCTTTCGGGGCCTATGGCTGTCGGCCTCCCAATAGTCCCTGGGGCTTGCAAGCCCTTCTTCTGTCCCTCAGGGTGCCCACACACATCCCCGATTTCTCATGAGCTTCTCAGCCTCCCTGCAGGCCAGGTGACAAACACAGTTGTCCTCATGGCCCAAATCGCCAGCTACTGAAGATCTCCGTGCCCACCTGGCCCTGGACGCGCAGGAGCCCTTGCCCTCGTAGAGGGACTTGGCCCTTTCTCTGAGCCTTCCCAGTAGTGCTTTTTAGAGAGTTCTTTATTCTCTGTTACCTGAAGATATTGAGAATTGCCTGAGTTCAGGAGCGACCCTGCCCTCAGCCATAGTGGTCTTGACCTGCTTCATATTCCACGCCCAG
Seq C2 exon
GATTTTCCTTCTCCAAGCCTCACCTGATCTCCCAATTGGAACGAGGGGAAGGACCCTGGGTAGCAGACATCCCCAGAACCTGGGCCACCGCAGGATTGCACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189420:ENST00000338647:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGTATCTTTTGAGGATGTGT
R:
AATCCTGCGGTGGCCCAG
Band lengths:
223-1651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains