MmuINT0179973 @ mm10
Intron Retention
Gene
ENSMUSG00000046185 | Zfp84
Description
zinc finger protein 84 [Source:MGI Symbol;Acc:MGI:107780]
Coordinates
chr7:29775338-29775991:+
Coord C1 exon
chr7:29775338-29775464
Coord A exon
chr7:29775465-29775904
Coord C2 exon
chr7:29775905-29775991
Length
440 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTTTCTCTTTCTTTGAGTAGGAC
3' ss Score
7.92
Exon sequences
Seq C1 exon
GAGTTGGTGGTGTTCAGGGACGTGGCTGTGGAGTTCTGTAAGGAGGAGTGGGAGTGTCTGGGCCCTGAGCAGAGGTCGCTATACAGAGATGTGATGCTGGAGAACTACAGCAACTTTGTGTCGCTGG
Seq A exon
GTAAGTTCATCTGTACCTCTCTGTAAGGGCTAGGGATGAAGGCCTGTGGGAGGGAGATAAGTCTACCACATGCAGCCTCAAACTATTGAGCCTTTTCCATCCCCACAGTCATGGCTTCACAGCTGGTAAACAGCTGCCATTGAATCCTTTGCTACACTCTGGCACATACTTTCTCAAGATACTTTCCTGCTTCTTTTAATTTTCAGTGATTCCTGCAAGCAACAGTTATTTCCTAAGGTGCTTGCTAAGTGGTGGCTTGCTCGCTGTTTGTTTGTTTGTTAGTTAGTTAGTTAGTTAGTTAGTTTGTTTGTTTGCATCACAGTCACTCTGAGGATCTGCAGTTTGTTTCAGGTTGTTAGTTCTGTGATGAATGCCTTTTGCTGTTGAGGCTTGTCTCTGTATTTGTCTTTACCGTTCTCTTTTTCTCTTTCTTTGAGTAG
Seq C2 exon
GACTTGCCATTTCTAAGCCATCAATAATTTCACTGCTGGAGCAAGGCAAAGAGCCCTGGATAGTGGAGCAAGCAGGATGGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046185:ENSMUST00000032802:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGTGGTGTTCAGGGAC
R:
ACCATCCTGCTTGCTCCACTA
Band lengths:
208-648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types