GgaINT1030521 @ galGal4
Intron Retention
Gene
ENSGALG00000018772 | ZNF302
Description
zinc finger protein 302 [Source:RefSeq peptide;Acc:NP_001025866]
Coordinates
chr18:30618-31474:+
Coord C1 exon
chr18:30618-30744
Coord A exon
chr18:30745-31363
Coord C2 exon
chr18:31364-31474
Length
619 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CACTCTTTCTATCAATTAAGTTC
3' ss Score
5.17
Exon sequences
Seq C1 exon
GAGCCCGTGAGCTTTGCAGAGGTGGCGGTGTATTTCAGCAGGGAGGAGTGGGCGCTGCTGGACCCTGCGCAGCGAGCGCTGTACCGGGACGTTATGCTGGAGACGTACCACTGTGTGGCCTCGCTGG
Seq A exon
GTGAGGGCTTTGCTGCTGTTCCTACTTATGTGGGCACCTCTGGCTGTGCAGAATATGCCTTTTCAAGTAGGGTGTGGACTAAATGCAGTGCAAGTATTTATAGATTAACACAACAGCATGAACAAATGAATCACAGAGAAACATGAGTTTCAGAATGTTTGAGTGCACTCAGTACTGTGCTGAAAGCCACGGAGTCACTGCTGGCAAGCAGGCATCATCCTGGAGGGGAGTACCAGAGCCCTGCAAGCAGCCCTTGTGCTGCTGCACTGCATGGTGCCACCAGCTCCAGCACCCAGATGACTCCTAGGTAACTCCTTTAGCATGAAGTGCTTTACTATTCCCTTCCCACAAACCTTTTTGAAGCCTTGGGCTTTGGGCAGTTTGGAAAAAGAATGAACTAAACGTCCTGAAGGGAAAGTTAAAGAACATGTCTCTGCATTACTTTCAGAGATGTGGGATGGGCACTGGGCTCCAAAGGAAGGCAGTATGTGTTGGCCAGTGTCCTTCAGGCCCTAACTATGGTTTCACAGTGGGGAGGGACACACAATAGAGTTGCTGGAGAAGCAGCTCTACCAGAGTCATGGAAATGCTCTCATCTCCACTCTTTCTATCAATTAAG
Seq C2 exon
TTCCACTTCCCGTCCACAAACCCCTGGTGATCACCTTGCTTGAAGGAGGGAAAGAACCCTGGATCCCAGATGTGTGCAGCCCAGAGAAGATGGTGGAAGAGCTTGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018772:ENSGALT00000040208:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.184
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCGTGAGCTTTGCAG
R:
CTGGGCCAAGCTCTTCCAC
Band lengths:
238-857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]