RnoINT0168468 @ rn6
Intron Retention
Gene
ENSRNOG00000016971 | Zfp612
Description
zinc finger protein 612 [Source:RGD Symbol;Acc:1307197]
Coordinates
chr19:41565313-41566091:-
Coord C1 exon
chr19:41565965-41566091
Coord A exon
chr19:41565421-41565964
Coord C2 exon
chr19:41565313-41565420
Length
544 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GTTTCCTTTTCCCAAATCAGGAT
3' ss Score
8.49
Exon sequences
Seq C1 exon
AAGTCGGTGACCTTTGAGGATGTGGCTGTGTACTTCACGCAGACGGAGTGGGATGGTCTGTCCCCTGAACAGAGAGCATTGTACAGGGATGTCATGCTGGAGAATTATAGGAACTTGGCCTCTGTGG
Seq A exon
GTAAGGCTTCTCCCCCTGGACTCAGACTCTGCCATTTTGTGTTTCTTAGCTCCTGTCTTCCTAAGAAGTGATGGTGGGGATGTGGTAATCCTTTATGCATGGGCTTTTTCTAATCTCCTTACGGAGATTGCCGGAAGAGCAAATCTCAAGCTGTTTGGGGCCAACATAGAACTTTGCTAAGACCCAGGCATGCTTCTGATCAACCCTGAGAAGCTGCTGTGTATCGGATATGGCTTGAAAATTAGGAACCTGCTGTCCTCCAGAGGTGCCTTCAGACTGCCCCACCTCACTATCAAGGCTTTTTAAGAATTTCAGTGAGCTCTGGGTATTTCAGGGTAAGATCAAGATGTGGTATCCCTTTTGGGCAGACTCTGGCTTTCTCCGCATGTGTTCCCTGGCCCACATTCGGACCCTTCTTATCCCTGTCCACTTCCTTTCTGGGGATCTAACCTTCTTCCCTCATGGCTGAGGCAATCTCAGGAGAAGTTAGGAATGTACATGTGGGAGAATTTTCATTCTCTTCTGTTTCCTTTTCCCAAATCAG
Seq C2 exon
GATTTCCACTTCTCAAACCTGCTGTGATCTCACAGCTAGAGGAAGGAGAGGATCTGGAAAGCCTGTCTCAGCTGGCCACTGGAACAGACTCCCAGGGCCTCTGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016971:ENSRNOT00000022757:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.162
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCGGTGACCTTTGAGGATG
R:
CAGAGGCCCTGGGAGTCTG
Band lengths:
230-774
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]