MmuINT0179574 @ mm10
Intron Retention
Gene
ENSMUSG00000044676 | Zfp612
Description
zinc finger protein 612 [Source:MGI Symbol;Acc:MGI:2443465]
Coordinates
chr8:110083657-110084451:+
Coord C1 exon
chr8:110083657-110083783
Coord A exon
chr8:110083784-110084343
Coord C2 exon
chr8:110084344-110084451
Length
560 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
GTTTCCTTTCCCCGAATCAGGAT
3' ss Score
7.6
Exon sequences
Seq C1 exon
AAGTCGGTGACCTTTGAGGACGTGGCTGTGTACTTCACCCAGACGGAATGGGATGGTCTGTCTCCTGGGCAGAGAGCGCTGTACAGGGATGTCATGCTGGAGAACTATAGGAACCTGGCCTCTGTAG
Seq A exon
GTAAGGCGTCTCTCCCTGGGACTTAGACTGCAATTTTGGATTTCTTAGCGCCTTTCTTCCTAAGAAGTGGTGGGTGGGGGTTTGGTAATTCTTTATGAGTGGGCTGTTTCTAATCTCTTATGTATAGATTGCTGGAAGAGCAAATCTCAAGCTGGCTGGGGCCAACACAGAACTTTGCTAAGACTCAGGCTTGCTTCTGGGGAAGCCTAGAGAAGCTGTATATTGGACATAGTTTGCAAAATAGAAACTTGCTGTTCTACAGAGGCCCCTTCAAATTGCCCCTCACCTTACTCTCTTGAGTCTTTTTAAGAATTTCAATAAACTCTGGGTATTTCAGGCTAAGATCAAGAAGTGGTATCCCTTTGGGCAGACTCTCCCAGCTTTCTCTGCACATGGTCCCTGGCTCCCATTCTGACCCTTCTCATCCCTATCCACCCCCTTTCTGAGGATCTTACCTTCTTCCCCCTGTGGCCGGGCCAGCCTCAGGAGAAGTTGGGAGAAGTTAGGAGTGTACGTGTGGGAGAGTTTTCATTCTCTTCTGTTTCCTTTCCCCGAATCAG
Seq C2 exon
GATTTCCACTTCTCAAACCTGCTGTGATCTCACAGCTAGAGGAACGAAAGGATCTGGAAAACCTGTTTCAGCTGGCCACTGGAACGGACTCCCAGGGCCTCTGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044676:ENSMUST00000212754:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCGGTGACCTTTGAGGAC
R:
CAGAGGCCCTGGGAGTCC
Band lengths:
230-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types