MmuEX0053486 @ mm10
Exon Skipping
Gene
ENSMUSG00000044676 | Zfp612
Description
zinc finger protein 612 [Source:MGI Symbol;Acc:MGI:2443465]
Coordinates
chr8:110083657-110092741:+
Coord C1 exon
chr8:110083657-110083783
Coord A exon
chr8:110084344-110084451
Coord C2 exon
chr8:110088422-110092741
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTTTCCCCGAATCAGGAT
3' ss Score
7.6
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
AAGTCGGTGACCTTTGAGGACGTGGCTGTGTACTTCACCCAGACGGAATGGGATGGTCTGTCTCCTGGGCAGAGAGCGCTGTACAGGGATGTCATGCTGGAGAACTATAGGAACCTGGCCTCTGTAG
Seq A exon
GATTTCCACTTCTCAAACCTGCTGTGATCTCACAGCTAGAGGAACGAAAGGATCTGGAAAACCTGTTTCAGCTGGCCACTGGAACGGACTCCCAGGGCCTCTGGACTG
Seq C2 exon
AATGTACTGCTGTCCAGTCCGGCAATAATCTGACAAAAGAAGTGCATGAAGAAGAAAAGAGTACATTATTTGAACTTCAGAAGGACTTTTCTCAGGAAACAAACTTTTCAAAAACGTATATTTTGGGCCAACAACAGGAAATCCGGTCAGCAGGAAGTGAGAGGGGGAGTGCCAGTGCCACCGATGGAAGAGCTAAGGCGAGCTCTGTGGAAGGGTGTTTGTTTAGTCAGACTCCACAATTGTCCCAGGATCATACCAGCTCCACTGGAGAGCTATATTCTGATACCAAACTTAGTAAGAGTGAAAGAATCACTACAGAGGAAAGACCTCTGAAACCCAGAGAATTAGCAGAGGCTTCTCAAGGCAGCCCTCAAGTTAATCAGCTTCCAGAGATCTGTGATGTGGAGAAGCCCTACCAGTGTGCAGAATGTGGCAAAGCCTTCAGTGTTAAAGCCAAGTTCGTCTGGCATCAGAGACTTCATAATGGAGAGAAACCTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044676_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.146
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.4),PF0062824=PHD=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF0009621=zf-C2H2=WD(100=3.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAATGGGATGGTCTGTCT
R:
CTTCCTGCTGACCGGATTTCC
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types