HsaEX6044805 @ hg19

Exon Skipping

Gene

ENSG00000167377 | ZNF23

Description

zinc finger protein 23 (KOX 16) [Source:HGNC Symbol;Acc:13023]

Coordinates

chr16:71481500-71488121:-

Coord C1 exon

chr16:71487945-71488121

Coord A exon

chr16:71487146-71487253

Coord C2 exon

chr16:71481500-71483785

Length

108 bp

Sequences

Splice sites

3' ss Seq

ATTTACCTCTCCCAAACCAGGAT

3' ss Score

7.53

5' ss Seq

CTGGTAAGG

5' ss Score

9.68

Exon sequences

Seq C1 exon

GGCCTGAGCTATGGAATTGGCCCTAGGGCAGCAGGAACCTATTGTTTCAGAAGTCGGTGACCTTTGAGGACGTGGCTGTGTACTTCACCCAGGCGGAATGGGATGGCCTGTCCCCTGCACAGAGGACCCTGTACAGGGATGTGATGCTGGAGAATTATGGGAATGTGGCCTCCCTGG

Seq A exon

GATTTCCACTTCTCAAACCTGCTGTGATCTCACAACTGGAGGGAGGAAGTGAGCTGGGGGGCTCATCTCCACTGGCTGCAGGAACAGGCCTCCAGGGCCTCCAGACTG

Seq C2 exon

ATATTCAGACTGACAATGATTTGACAAAGGAAATGTATGAAGGAAAAGAGAATGTATCATTTGAACTTCAAAGAGACTTTTCCCAGGAAACAGACTTTTCAGAAGCCTCTCTTCTAGAGAAACAACAGGAAGTCCACTCAGCAGGAAATATAAAGAAGGAGAAGAGCAACACCATTGATGGAACAGTGAAAGATGAGACAAGCCCCGTGGAGGAGTGTTTTTTTAGTCAAAGTTCAAACTCATATCAGTGTCATACCATCACTGGAGAGCAGCCCTCTGGGTGTACAGGATTGGGGAAATCCATCAGCTTTGATACAAAACTCGTGAAGCATGAAATAATTAATTCTGAGGAAAGACCTTTCAAATGTGAAGAATTAGTAGAGCCCTTTAGGTGTGACTCTCAACTTATTCAACATCAAGAGAACAACACTGAGGAAAAGCCTTATCAGTGTTCGGAGTGTGGCAAAGCTTTCAGCATTAATGAGAAATTAATTTGGCAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000167377-'15-21,'15-18,16-21=AN

Average complexity

A_C3

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.622 C2=0.099

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=100.0)

A:

NO

C2:

PF079757=C1_4=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=4.3),PF127602=Zn_Tnp_IS1595=WD(100=10.1),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF097235=Zn-ribbon_8=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF079757=C1_4=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF0009621=zf-C2H2=WD(100=3.9)

Main Inclusion Isoform:

ENSP00000349796