HsaALTA0009765-1/2 @ hg19

Alternative 3'ss

Gene

ENSG00000167377 | ZNF23

Description

zinc finger protein 23 (KOX 16) [Source:HGNC Symbol;Acc:13023]

Coordinates

chr16:71482766-71487876:-

Coord C1 exon

chr16:71487146-71487876

Coord A exon

NA

Coord C2 exon

chr16:71482766-71483785

Length

0 bp

Sequences

Splice sites

5' ss Seq

CTGGTAAGG

5' ss Score

9.68

3' ss Seq

TTTTCTGTTTTTTATAGTAGATA

3' ss Score

6.16

Exon sequences

Seq C1 exon

ATCTTACCTGTCTTGAGTCTTTTCAAGGATCTCAGTGTACTCTGGATTATTTCAGGCCAAGGTCAAAAAGTGGTATCCCTTTGGGCAGAATCTCCCTGCTTGCCCTGCATGAGGTCTCCTAGGCCTACAGTCTGGGCCCTAACCAGGCTCTCCCACACGTTCCCAAGCCTTCACCCCCAACCCCCACATTTGCCTCCCAAAGCCCTTGGAAGTCTCCAAGGTCTCTTTAGTCCTTCCTAAGCCCCACAGTACTTTCCCGTAGTCCTGAGGCTTGGGACCTCCTGGGGTTCTTACCTTCCCTCCCCATTGCTGAGACAGTCTGAGAAGAGGCTTAGGAATTTGTCTGTGGGAGTTTATTCATCTGTCTCTCCTATTTACCTCTCCCAAACCAGGATTTCCACTTCTCAAACCTGCTGTGATCTCACAACTGGAGGGAGGAAGTGAGCTGGGGGGCTCATCTCCACTGGCTGCAGGAACAGGCCTCCAGGGCCTCCAGACTG

Seq A exon

NA

Seq C2 exon

ATATTCAGACTGACAATGATTTGACAAAGGAAATGTATGAAGGAAAAGAGAATGTATCATTTGAACTTCAAAGAGACTTTTCCCAGGAAACAGACTTTTCAGAAGCCTCTCTTCTAGAGAAACAACAGGAAGTCCACTCAGCAGGAAATATAAAGAAGGAGAAGAGCAACACCATTGATGGAACAGTGAAAGATGAGACAAGCCCCGTGGAGGAGTGTTTTTTTAGTCAAAGTTCAAACTCATATCAGTGTCATACCATCACTGGAGAGCAGCCCTCTGGGTGTACAGGATTGGGGAAATCCATCAGCTTTGATACAAAACTCGTGAAGCATGAAATAATTAATTCTGAGGAAAGACCTTTCAAATGTGAAGAATTAGTAGAGCCCTTTAGGTGTGACTCTCAACTTATTCAACATCAAGAGAACAACACTGAGGAAAAGCCTTATCAGTGTTCGGAGTGTGGCAAAGCTTTCAGCATTAATGAGAAATTAATTTGGCAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000167377-16-21,16-20-1/2

Average complexity

Alt3

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.622 A=NA C2=0.099

Domain overlap (PFAM):

C1:

NO

A:

NA

C2:

PF079757=C1_4=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=4.2),PF127602=Zn_Tnp_IS1595=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF097235=Zn-ribbon_8=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF0009621=zf-C2H2=WD(100=3.9)

Main Inclusion Isoform:

ENSP00000349796