HsaEX6044804 @ hg19
Exon Skipping
Gene
ENSG00000167377 | ZNF23
Description
zinc finger protein 23 (KOX 16) [Source:HGNC Symbol;Acc:13023]
Coordinates
chr16:71487146-71490024:-
Coord C1 exon
chr16:71489975-71490024
Coord A exon
chr16:71487945-71488071
Coord C2 exon
chr16:71487146-71487253
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCAGGAACCTATTGTTTCAGAAG
3' ss Score
1.37
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GGACTTCACGGATCCCCTGAAGCTCATCCATGGACTTCCATGGACTACAG
Seq A exon
AAGTCGGTGACCTTTGAGGACGTGGCTGTGTACTTCACCCAGGCGGAATGGGATGGCCTGTCCCCTGCACAGAGGACCCTGTACAGGGATGTGATGCTGGAGAATTATGGGAATGTGGCCTCCCTGG
Seq C2 exon
GATTTCCACTTCTCAAACCTGCTGTGATCTCACAACTGGAGGGAGGAAGTGAGCTGGGGGGCTCATCTCCACTGGCTGCAGGAACAGGCCTCCAGGGCCTCCAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167377-'14-18,'14-17,15-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.622
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCACGGATCCCCTGAA
R:
CAGTCTGGAGGCCCTGGAG
Band lengths:
158-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)