MmuEX6038383 @ mm10
Exon Skipping
Gene
ENSMUSG00000044676 | Zfp612
Description
zinc finger protein 612 [Source:MGI Symbol;Acc:MGI:2443465]
Coordinates
chr8:110082678-110084451:+
Coord C1 exon
chr8:110082678-110082742
Coord A exon
chr8:110083657-110083783
Coord C2 exon
chr8:110084344-110084451
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCAAGAACCTGTTGTTTCAGAAG
3' ss Score
1.8
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
CTCCAGTCCTTCCTTGAGAGGGAGACCAGGTGACAGCAGCCATGATCCCATCGGTTTGGCCCCAG
Seq A exon
AAGTCGGTGACCTTTGAGGACGTGGCTGTGTACTTCACCCAGACGGAATGGGATGGTCTGTCTCCTGGGCAGAGAGCGCTGTACAGGGATGTCATGCTGGAGAACTATAGGAACCTGGCCTCTGTAG
Seq C2 exon
GATTTCCACTTCTCAAACCTGCTGTGATCTCACAGCTAGAGGAACGAAAGGATCTGGAAAACCTGTTTCAGCTGGCCACTGGAACGGACTCCCAGGGCCTCTGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044676-'1-9,'1-6,8-9=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTCCTTCCTTGAGAGGG
R:
CAGAGGCCCTGGGAGTCC
Band lengths:
167-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types