RnoEX0101571 @ rn6
Exon Skipping
Gene
ENSRNOG00000016971 | Zfp612
Description
zinc finger protein 612 [Source:RGD Symbol;Acc:1307197]
Coordinates
chr19:41565313-41567013:-
Coord C1 exon
chr19:41566981-41567013
Coord A exon
chr19:41565965-41566091
Coord C2 exon
chr19:41565313-41565420
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCAAGAACCTGTTGTTTCAGAAG
3' ss Score
1.8
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATGACAGCCATGATCCCATCGGTTTGGCCCCAG
Seq A exon
AAGTCGGTGACCTTTGAGGATGTGGCTGTGTACTTCACGCAGACGGAGTGGGATGGTCTGTCCCCTGAACAGAGAGCATTGTACAGGGATGTCATGCTGGAGAATTATAGGAACTTGGCCTCTGTGG
Seq C2 exon
GATTTCCACTTCTCAAACCTGCTGTGATCTCACAGCTAGAGGAAGGAGAGGATCTGGAAAGCCTGTCTCAGCTGGCCACTGGAACAGACTCCCAGGGCCTCTGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016971_MULTIEX1-2/3=C1-C2
Average complexity
ME(2-3[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.162
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACAGCCATGATCCCATCG
R:
CCCTGGGAGTCTGTTCCAGTG
Band lengths:
130-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]