RnoALTD0034576-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000016971 | Zfp612
Description
zinc finger protein 612 [Source:RGD Symbol;Acc:1307197]
Coordinates
chr19:41565965-41567045:-
Coord C1 exon
chr19:41566981-41567045
Coord A exon
chr19:41566878-41566980
Coord C2 exon
chr19:41565965-41566091
Length
103 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GCAAGAACCTGTTGTTTCAGAAG
3' ss Score
1.8
Exon sequences
Seq C1 exon
CTCCAGTCTTTCCTTGAGAGGGAGACCAGGTGATGACAGCCATGATCCCATCGGTTTGGCCCCAG
Seq A exon
GTGAGCTGTTGGTCCCTCATCCCTTCTGTGCAGTTCAGATTGAGAGCTGGTGAGACTTGGAAGGAAAAGCGCTTCTACCTGCCGGATGGATCTCGTGAGAAAG
Seq C2 exon
AAGTCGGTGACCTTTGAGGATGTGGCTGTGTACTTCACGCAGACGGAGTGGGATGGTCTGTCCCCTGAACAGAGAGCATTGTACAGGGATGTCATGCTGGAGAATTATAGGAACTTGGCCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016971-1-4,2-4,3-4-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTCTTTCCTTGAGAGGGA
R:
CCACAGAGGCCAAGTTCCTAT
Band lengths:
191-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]