RnoALTA0045778-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000016971 | Zfp612
Description
zinc finger protein 612 [Source:RGD Symbol;Acc:1307197]
Coordinates
chr19:41565965-41567013:-
Coord C1 exon
chr19:41566981-41567013
Coord A exon
chr19:41566089-41566091
Coord C2 exon
chr19:41565965-41566088
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCAAGAACCTGTTGTTTCAGAAG
3' ss Score
1.8
Exon sequences
Seq C1 exon
ATGACAGCCATGATCCCATCGGTTTGGCCCCAG
Seq A exon
AAG
Seq C2 exon
TCGGTGACCTTTGAGGATGTGGCTGTGTACTTCACGCAGACGGAGTGGGATGGTCTGTCCCCTGAACAGAGAGCATTGTACAGGGATGTCATGCTGGAGAATTATAGGAACTTGGCCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016971-1-5,1-4,1-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATGATCCCATCGGTTTG
R:
CTCTGTTCAGGGGACAGACCA
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]