RnoEX0101572 @ rn6
Exon Skipping
Gene
ENSRNOG00000016971 | Zfp612
Description
zinc finger protein 612 [Source:RGD Symbol;Acc:1307197]
Coordinates
chr19:41565313-41567013:-
Coord C1 exon
chr19:41566981-41567013
Coord A exon
chr19:41565630-41565915
Coord C2 exon
chr19:41565313-41565420
Length
286 bp
Sequences
Splice sites
3' ss Seq
TGCCATTTTGTGTTTCTTAGCTC
3' ss Score
8.23
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATGACAGCCATGATCCCATCGGTTTGGCCCCAG
Seq A exon
CTCCTGTCTTCCTAAGAAGTGATGGTGGGGATGTGGTAATCCTTTATGCATGGGCTTTTTCTAATCTCCTTACGGAGATTGCCGGAAGAGCAAATCTCAAGCTGTTTGGGGCCAACATAGAACTTTGCTAAGACCCAGGCATGCTTCTGATCAACCCTGAGAAGCTGCTGTGTATCGGATATGGCTTGAAAATTAGGAACCTGCTGTCCTCCAGAGGTGCCTTCAGACTGCCCCACCTCACTATCAAGGCTTTTTAAGAATTTCAGTGAGCTCTGGGTATTTCAGG
Seq C2 exon
GATTTCCACTTCTCAAACCTGCTGTGATCTCACAGCTAGAGGAAGGAGAGGATCTGGAAAGCCTGTCTCAGCTGGCCACTGGAACAGACTCCCAGGGCCTCTGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016971_MULTIEX1-3/3=C1-C2
Average complexity
ME(2-3[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.162
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCATGATCCCATCGGTTT
R:
CAGAGGCCCTGGGAGTCTG
Band lengths:
132-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]