RnoEX0101570 @ rn6
Exon Skipping
Gene
ENSRNOG00000016971 | Zfp612
Description
zinc finger protein 612 [Source:RGD Symbol;Acc:1307197]
Coordinates
chr19:41565965-41567013:-
Coord C1 exon
chr19:41566981-41567013
Coord A exon
chr19:41566273-41566305
Coord C2 exon
chr19:41565965-41566091
Length
33 bp
Sequences
Splice sites
3' ss Seq
GGGAATTCTTTTTCTTTCAGCCC
3' ss Score
6.72
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
Exon sequences
Seq C1 exon
ATGACAGCCATGATCCCATCGGTTTGGCCCCAG
Seq A exon
CCCAGTGTGAAAATGACATGCGGTTTCTCTGCT
Seq C2 exon
AAGTCGGTGACCTTTGAGGATGTGGCTGTGTACTTCACGCAGACGGAGTGGGATGGTCTGTCCCCTGAACAGAGAGCATTGTACAGGGATGTCATGCTGGAGAATTATAGGAACTTGGCCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016971_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSRNOT00000022757fB16979
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGATCCCATCGGTTTGGCC
R:
TCTCCAGCATGACATCCCTGT
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]