MmuEX1028569 @ mm10
Exon Skipping
Gene
ENSMUSG00000044676 | Zfp612
Description
zinc finger protein 612 [Source:MGI Symbol;Acc:MGI:2443465]
Coordinates
chr8:110082678-110083783:+
Coord C1 exon
chr8:110082678-110082742
Coord A exon
chr8:110083441-110083473
Coord C2 exon
chr8:110083657-110083783
Length
33 bp
Sequences
Splice sites
3' ss Seq
GGGGGTTCTTTTTCTTTCAGCCG
3' ss Score
6.89
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
Exon sequences
Seq C1 exon
CTCCAGTCCTTCCTTGAGAGGGAGACCAGGTGACAGCAGCCATGATCCCATCGGTTTGGCCCCAG
Seq A exon
CCGAGTGTGAAAGTGGCACGCGGTTTCTCTGCT
Seq C2 exon
AAGTCGGTGACCTTTGAGGACGTGGCTGTGTACTTCACCCAGACGGAATGGGATGGTCTGTCTCCTGGGCAGAGAGCGCTGTACAGGGATGTCATGCTGGAGAACTATAGGAACCTGGCCTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044676_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSMUST00000212754fB19954
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTCCTTCCTTGAGAGGG
R:
ACAGACCATCCCATTCCGTCT
Band lengths:
125-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types