MmuINT0179573 @ mm10
Intron Retention
Gene
ENSMUSG00000044676 | Zfp612
Description
zinc finger protein 612 [Source:MGI Symbol;Acc:MGI:2443465]
Coordinates
chr8:110082678-110083783:+
Coord C1 exon
chr8:110082678-110082742
Coord A exon
chr8:110082743-110083656
Coord C2 exon
chr8:110083657-110083783
Length
914 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCAAGAACCTGTTGTTTCAGAAG
3' ss Score
1.8
Exon sequences
Seq C1 exon
CTCCAGTCCTTCCTTGAGAGGGAGACCAGGTGACAGCAGCCATGATCCCATCGGTTTGGCCCCAG
Seq A exon
GTGAGCCGGGGGACCCTCATCCTTTCTTCTGGGCAGTTCAGATTGAGAGCTGGGAGCTGGCGAGACTTGGAAGGAAAAGCGCTTCTACCTGCCGGCCGGATCTCATGAGAAAGAGGGCAGACAGGTGGCAGAGACTTGGAGAGTGACCAGCGAAGGTGGCAGGACAGTGAACTCAGCAGACGGAGTCACACAAGGGTCTGCATGGCACTGCACTTGAGCACCCTGGCAGAGGGCGTCTGGAAAAAATGTTGCCATGGAAACCACCCATGTGGTACTTTGAGGAGTTGCAGAGGTTTAGGGTAATTGATAGCTGGGGTGGAAAGAAGAGCTGCAGTCCAGTAAGAAGGACGCTGTGCCTCTGACTAGGAGGGATGAGGTCCATGGTAGAAAGTGGGAGCAGGCAAGGGAGAGACAGCAGAGCTGTGAGTCCTGGGTGGGGGTCTATGTGGGGAGTCAGGTGGCAGATGGGTTAGAAGCCAGGCTACCCTTAGAAGGATGAGGGGCATGTGTTTTGCCATATGAGGATGGGAGTCGTGGGACTGGGGCCTAAGGCAAACCAAAGAGGTGCCGAGACCTGGCAGGGATGCAGTGGGAGCTGCAGATGCTCCCAGCAGCTCCCAGCCAGTGAGGGACAGCCAGCCTGTCTAAGGGTACAATTGTGTAGTCGAATTTGCTCACGGGGGTTCTTTTTCTTTCAGCCGAGTGTGAAAGTGGCACGCGGTTTCTCTGCTGTAAGAGGAGGAGGATATCCCATAGTTTACTTCCCCGGTGTCTTTTTTTCTCCACTTTCCCTTGTTACTAACTTTGTGCTCCTCGCAAGCCCCCTCTCCAAGCCCTTACTTTGCCCTCTGCCCCTTTACTTAGGGCCTGAGCCATGGAATTGGCCCTAGGGCAGCAAGAACCTGTTGTTTCAG
Seq C2 exon
AAGTCGGTGACCTTTGAGGACGTGGCTGTGTACTTCACCCAGACGGAATGGGATGGTCTGTCTCCTGGGCAGAGAGCGCTGTACAGGGATGTCATGCTGGAGAACTATAGGAACCTGGCCTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044676:ENSMUST00000212754:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTCCTTCCTTGAGAGGG
R:
CTACAGAGGCCAGGTTCCTAT
Band lengths:
191-1105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types