MmuINT0179573 @ mm9
Intron Retention
Gene
ENSMUSG00000044676 | Zfp612
Description
zinc finger protein 612 [Source:MGI Symbol;Acc:MGI:2443465]
Coordinates
chr8:112606578-112607683:+
Coord C1 exon
chr8:112606578-112606642
Coord A exon
chr8:112606643-112607556
Coord C2 exon
chr8:112607557-112607683
Length
914 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCAAGAACCTGTTGTTTCAGAAG
3' ss Score
1.8
Exon sequences
Seq C1 exon
CTCCAGTCCTTCCTTGAGAGGGAGACCAGGTGACAGCAGCCATGATCCCATCGGTTTGGCCCCAG
Seq A exon
GTGAGCCGGGGGACCCTCATCCTTTCTTCTGGGCAGTTCAGATTGAGAGCTGGGAGCTGGCGAGACTTGGAAGGAAAAGCGCTTCTACCTGCCGGCCGGATCTCATGAGAAAGAGGGCAGACAGGTGGCAGAGACTTGGAGAGTGACCAGCGAAGGTGGCAGGACAGTGAACTCAGCAGACGGAGTCACACAAGGGTCTGCATGGCACTGCACTTGAGCACCCTGGCAGAGGGCGTCTGGAAAAAATGTTGCCATGGAAACCACCCATGTGGTACTTTGAGGAGTTGCAGAGGTTTAGGGTAATTGATAGCTGGGGTGGAAAGAAGAGCTGCAGTCCAGTAAGAAGGACGCTGTGCCTCTGACTAGGAGGGATGAGGTCCATGGTAGAAAGTGGGAGCAGGCAAGGGAGAGACAGCAGAGCTGTGAGTCCTGGGTGGGGGTCTATGTGGGGAGTCAGGTGGCAGATGGGTTAGAAGCCAGGCTACCCTTAGAAGGATGAGGGGCATGTGTTTTGCCATATGAGGATGGGAGTCGTGGGACTGGGGCCTAAGGCAAACCAAAGAGGTGCCGAGACCTGGCAGGGATGCAGTGGGAGCTGCAGATGCTCCCAGCAGCTCCCAGCCAGTGAGGGACAGCCAGCCTGTCTAAGGGTACAATTGTGTAGTCGAATTTGCTCACGGGGGTTCTTTTTCTTTCAGCCGAGTGTGAAAGTGGCACGCGGTTTCTCTGCTGTAAGAGGAGGAGGATATCCCATAGTTTACTTCCCCGGTGTCTTTTTTTCTCCACTTTCCCTTGTTACTAACTTTGTGCTCCTCGCAAGCCCCCTCTCCAAGCCCTTACTTTGCCCTCTGCCCCTTTACTTAGGGCCTGAGCCATGGAATTGGCCCTAGGGCAGCAAGAACCTGTTGTTTCAG
Seq C2 exon
AAGTCGGTGACCTTTGAGGACGTGGCTGTGTACTTCACCCAGACGGAATGGGATGGTCTGTCTCCTGGGCAGAGAGCGCTGTACAGGGATGTCATGCTGGAGAACTATAGGAACCTGGCCTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044676-Zfp612:NM_175480:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTCCTTCCTTGAGAGGG
R:
CTACAGAGGCCAGGTTCCTAT
Band lengths:
191-1105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: