HsaINT0186515 @ hg38
Intron Retention
Gene
ENSG00000167377 | ZNF23
Description
zinc finger protein 23 [Source:HGNC Symbol;Acc:HGNC:13023]
Coordinates
chr16:71456072-71456828:-
Coord C1 exon
chr16:71456764-71456828
Coord A exon
chr16:71456122-71456763
Coord C2 exon
chr16:71456072-71456121
Length
642 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AATTTTCCATACATTTTCAGGGA
3' ss Score
8.34
Exon sequences
Seq C1 exon
CTCCAGCCCTTCTCTGAGACGGGGACCAGGGGATGGCAGCCATGCACCTGACAGCCTGGCCCCAG
Seq A exon
GTGAGCTGTGGGGTCCTTCAGCTCTTCCTCTGGGCAGTTTCAGATTGAAAAACATTGAGAAGGGGAGCTGGTGAGCCTCGGGATGACAGCTGCTTCCACCTGCTGGACTGGAACTTGTGGGAAAGAGGTGTTGTGCAGGGAGGGCGGCAGAGACCAGGACAGTAGCGAGTGGAGGAAGCGGGAGAGTGAGCAGGAGAGCAGGAGGGTGGTGGTCTTCTGCACACTGAGGGTCTCTGCTCCTCTCTACAGGAGCACCCCCAGCATAGGGCTCTGGGTGAATGGGGACGTGGAAACCGCCCCTGTGGGATGTACTGTGCAGGGGTGTCAGTGGAGCACAGTCGCAGAGGATTGGACTATCTGTGGTGGGGATGTAGAGAAGAGGAATAGCAGGACCTGATCAGAGAAGGATGGCCGTGCCTCTAATTCAGGGGTAAGGGAAGGTCACAGGGAGTGGAGTCAAGGGAGGGGGAAGACAGTCACATGGGACGGAATGTCTCATTGTGCTTGTGAAGCTTTCAAAGTTTAGGATGCAGACTTTAGGTCTCTGAGAAGAGCTTTCCACCCTGTCCTGCAGGAAAGAGGTGTTGTGCGGGGAACCTGCAGAACATAAACCTGCAAACCAAATTTTCCATACATTTTCAG
Seq C2 exon
GGACTTCACGGATCCCCTGAAGCTCATCCATGGACTTCCATGGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167377:ENST00000393539:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains