HsaALTD1033796-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000167377 | ZNF23
Description
zinc finger protein 23 [Source:HGNC Symbol;Acc:HGNC:13023]
Coordinates
chr16:71454042-71456828:-
Coord C1 exon
chr16:71456764-71456828
Coord A exon
NA
Coord C2 exon
chr16:71454042-71454218
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCGCTCTGCCCCTCACTTAGGGC
3' ss Score
6.99
Exon sequences
Seq C1 exon
CTCCAGCCCTTCTCTGAGACGGGGACCAGGGGATGGCAGCCATGCACCTGACAGCCTGGCCCCAG
Seq A exon
NA
Seq C2 exon
GGCCTGAGCTATGGAATTGGCCCTAGGGCAGCAGGAACCTATTGTTTCAGAAGTCGGTGACCTTTGAGGACGTGGCTGTGTACTTCACCCAGGCGGAATGGGATGGCCTGTCCCCTGCACAGAGGACCCTGTACAGGGATGTGATGCTGGAGAATTATGGGAATGTGGCCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167377-4-14,5-14,6-14-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCACCTGACAGCCTGG
R:
TCTCCAGCATCACATCCCTGT
Band lengths:
178-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains