HsaEX0073212 @ hg38
Exon Skipping
Gene
ENSG00000167377 | ZNF23
Description
zinc finger protein 23 [Source:HGNC Symbol;Acc:HGNC:13023]
Coordinates
chr16:71454042-71456828:-
Coord C1 exon
chr16:71456764-71456828
Coord A exon
chr16:71456072-71456121
Coord C2 exon
chr16:71454042-71454168
Length
50 bp
Sequences
Splice sites
3' ss Seq
AATTTTCCATACATTTTCAGGGA
3' ss Score
8.34
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
Exon sequences
Seq C1 exon
CTCCAGCCCTTCTCTGAGACGGGGACCAGGGGATGGCAGCCATGCACCTGACAGCCTGGCCCCAG
Seq A exon
GGACTTCACGGATCCCCTGAAGCTCATCCATGGACTTCCATGGACTACAG
Seq C2 exon
AAGTCGGTGACCTTTGAGGACGTGGCTGTGTACTTCACCCAGGCGGAATGGGATGGCCTGTCCCCTGCACAGAGGACCCTGTACAGGGATGTGATGCTGGAGAATTATGGGAATGTGGCCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167377_MULTIEX1-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGCCCTTCTCTGAGACG
R:
TACAGGGTCCTCTGTGCAGG
Band lengths:
148-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development