MmuEX0053122 @ mm9
Exon Skipping
Gene
ENSMUSG00000022526 | Zfp251
Description
zinc finger protein 251 [Source:MGI Symbol;Acc:MGI:1918841]
Coordinates
chr15:76700237-76701865:-
Coord C1 exon
chr15:76701083-76701865
Coord A exon
chr15:76700712-76700844
Coord C2 exon
chr15:76700237-76700350
Length
133 bp
Sequences
Splice sites
3' ss Seq
CCGGCATGTTGTCATTCCAGGGT
3' ss Score
6.02
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GGCGACGCGGCCTTGGGAGGCATGGATGTGAAGGACGATGACTTTTAAGTTTTTGCCCAGAGCTAGCCCTCGCCGCCTGTGTGTCCACTCACACCCGCAACCCGGTGAGGCCTGTCGCGGCGAGGCCCGTAGCCTTTTCCAGGCTGGCCCTCTAAAGCTGAGGTGGTGCTATGCGTCCACTCTGGGTGTCCTGGCGCATGGCTGGAACTGCCAACTCGCGCCGTGCATGGGGCAGTTCTCAGTTTGGATAGCGGCACGGGACAGGTCACACGCCGGCACTCGCGGCTTTAGGACACTCCAGAAGGCCACTTCCGAAGCAAGGTCTGTCGTCGTCTTCTGACCATCCGGCCATTGCCCCAGCTGAATGGGGCTGAGTTTGTCTGTTTTCTCTCCCTGAGAGTAAGTTAGGGAGACCCCAGGCCGGGGCTGCCTCCTGCCTACCACGGATTCCAAGGTGGTTCACAGCCCAGATGGCTGACAAGTCCTGCTCCCCGACTCCG
Seq A exon
GGTGAGACGCCTCTGACCTTCCAAGATGTGGCTGTGTACTTCTCCAGGGCAGAAGGGCAGCAGCTTAGCCCCCAGGAGCGGGCGCTGTACCGGGATGTGATGTTGGAGAACTATGGGAACGTGGCTTCACTGG
Seq C2 exon
GATTCCCAGGCCCTAAGCCAGAACTGATCTCCCAGCTGGAGCAAGAGGAGGAGCTGTGGGTCCTGGATCTTCTCGGGGCTGAAGAACCAGAAGTCTTGAGACGTTGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022526_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.089 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=91.1)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTCGTCGTCTTCTGACCA
R:
CGAGAAGATCCAGGACCCACA
Band lengths:
253-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: