RnoEX0101149 @ rn6
Exon Skipping
Gene
ENSRNOG00000030308 | Zfp251
Description
zinc finger protein 251 [Source:RGD Symbol;Acc:1311138]
Coordinates
chr7:117938438-117940007:-
Coord C1 exon
chr7:117939245-117940007
Coord A exon
chr7:117938882-117938967
Coord C2 exon
chr7:117938438-117938551
Length
86 bp
Sequences
Splice sites
3' ss Seq
GTGGCTGTGTACTTCTCCAGGGC
3' ss Score
7.1
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GCCGGCGGCGACGCGGCCTTGGGGGGCATGGATGTGAAGAACGATGGCCTTTAGGTTTTGCCCAGGGCTAACCCTCGCCGCCTATTTCATGTCCACTCACACCCGCAACCCTGTGAGGCCTATCGCCGTGAGGCCCGCAGCCTTTTCCAGGCTGGCCCTCTAAGGCTGAGGCGGTGCTATGAGTCCACTCTTGGTGTCCTGGTGCATGGCTGGAACTGCCAACTTGCGCCGTGCTTGGGGCAGTTCTCAGTTTGGATAGCAGCACGGGACAGGTCGGTCACACGCTGGCTCTCGAGGCTTCAGGACACTCCAGAAGGCCACTTCCGAAGCAAGGTCTGTCGTCCTCTTCTGACCATCTGTCCACTGCCCCAGCCGAATGGGGCTGAGTTTGTCTGTTTTCTCTCCCTGAGAGTAAGTTGGAGAGGCCTCAGGCTGGGGCTGCCTCCTGCTTACCACCGATCCCAACCCAGATGGCTGCCAAGTCCTGCTCCCGGACTCCG
Seq A exon
GGCGGAAGGGCAGCAGCTTAGCCCCCAGGAGCGGGCGCTGTACCGGGATGTGATGTTGGAGAACTATGGGAACGTGGCCTCACTGG
Seq C2 exon
GATTCCCAGGCCCTAAGCCAGAGCTGATCTCCCAGCTGGAGCAAGAGGAGGAGCTGTGGGTCCTGGATCTTCTCGGGGCTGAGGAACCAGAAGTCTTGAGAAGCTGCGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030308-'1-2,'1-1,2-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=0.089 C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=91.1)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTACCACCGATCCCAAC
R:
GTCCCGCAGCTTCTCAAGAC
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]