BtaEX6093567 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018057 | ZNF619
Description
zinc finger protein 619 [Source:HGNC Symbol;Acc:HGNC:26910]
Coordinates
chr22:13369804-13377918:+
Coord C1 exon
chr22:13369804-13369887
Coord A exon
chr22:13377145-13377271
Coord C2 exon
chr22:13377814-13377918
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCAGGAACCTGTTGTTTCAGGAG
3' ss Score
2.62
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TTTTTAAGGTTCTTGCTTTTCCAAACCGGGAAGAGTGCACAGAGCCAGGGGACATCAGCCATGCTCCAAACCACTTGGCCTCAG
Seq A exon
GAGCCAGTGACCTTTGAGGACGTGGCCGTGTACTTCACCCAGAACCAATGGGCCAGCCTGGACTCTGCGCAGAGGGCCCTGTATAGGGAGGTGATGCTGGAGAATTACAAAAATGTGGCTTCCCTTG
Seq C2 exon
TGTCTCCATTCCCCAGACCTGATCTGATCTCCCAGCTGGAGAGAGGGGAAGCTCCATGGGACCCCGATCCCTGGGAAGCAGAGGATTTGAGAGGCATCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018057-'15-18,'15-14,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGGTTCTTGCTTTTCCAAACCG
R:
CTGGACAGATGCCTCTCAAATCC
Band lengths:
186-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]