HsaEX0074071 @ hg19
Exon Skipping
Gene
ENSG00000177842 | ZNF620
Description
zinc finger protein 620 [Source:HGNC Symbol;Acc:28742]
Coordinates
chr3:40547795-40554006:+
Coord C1 exon
chr3:40547795-40547867
Coord A exon
chr3:40552961-40553087
Coord C2 exon
chr3:40553893-40554006
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCAGGAACTTGTTGTTTTAGGAA
3' ss Score
5.26
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
TTTCACTTCTCCGAACCCTGAGGCAGTGTGTGAAGCTGGGACGCCAGCCATGTTCCAGACCGCTTGGCGCCAG
Seq A exon
GAACCAGTGACCTTTGAGGATGTGGCTGTGTACTTCACCCAGAATGAATGGGCCAGCCTGGACTCTGTGCAGAGGGCCCTGTACAGGGAAGTGATGCTGGAGAATTATGCAAATGTGGCTTCCCTGG
Seq C2 exon
CATTCCCATTCACCACGCCTGTTCTGGTCTCCCAGCTGGAGCAAGGGGAACTGCCATGGGGCCTCGATCCCTGGGAACCTATGGGCAGGGAGGCTCTCAGAGGTATCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177842-'2-5,'2-4,6-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.218
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTTCTCCGAACCCTGAGG
R:
GATACCTCTGAGAGCCTCCCTG
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)