HsaEX0074073 @ hg19

Exon Skipping

Gene

ENSG00000177842 | ZNF620

Description

zinc finger protein 620 [Source:HGNC Symbol;Acc:28742]

Coordinates

chr3:40552961-40557435:+

Coord C1 exon

chr3:40552961-40553087

Coord A exon

chr3:40553893-40554006

Coord C2 exon

chr3:40557351-40557435

Length

114 bp

Sequences

Splice sites

3' ss Seq

GTTTCTTTCTCCCTGGGCAGCAT

3' ss Score

8.55

5' ss Seq

CAGGTGAGC

5' ss Score

9.6

Exon sequences

Seq C1 exon

GAACCAGTGACCTTTGAGGATGTGGCTGTGTACTTCACCCAGAATGAATGGGCCAGCCTGGACTCTGTGCAGAGGGCCCTGTACAGGGAAGTGATGCTGGAGAATTATGCAAATGTGGCTTCCCTGG

Seq A exon

CATTCCCATTCACCACGCCTGTTCTGGTCTCCCAGCTGGAGCAAGGGGAACTGCCATGGGGCCTCGATCCCTGGGAACCTATGGGCAGGGAGGCTCTCAGAGGTATCTGTCCAG

Seq C2 exon

GGGATGAGGCCAGAACTGAGAAGGAAGGATTAACTCCAAAGGATCATGTGTCCAAAGAAACAGAGTCCTTCAGACTGATGGTGGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000177842-'6-6,'6-5,8-6

Average complexity

C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.218 C2=0.244

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF097235=Zn-ribbon_8=WD(100=12.2),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.5)

Main Inclusion Isoform:

ENSP00000322265