HsaEX0074073 @ hg38
Exon Skipping
Gene
ENSG00000177842 | ZNF620
Description
zinc finger protein 620 [Source:HGNC Symbol;Acc:HGNC:28742]
Coordinates
chr3:40511470-40515944:+
Coord C1 exon
chr3:40511470-40511596
Coord A exon
chr3:40512402-40512515
Coord C2 exon
chr3:40515860-40515944
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTCTCCCTGGGCAGCAT
3' ss Score
8.55
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAACCAGTGACCTTTGAGGATGTGGCTGTGTACTTCACCCAGAATGAATGGGCCAGCCTGGACTCTGTGCAGAGGGCCCTGTACAGGGAAGTGATGCTGGAGAATTATGCAAATGTGGCTTCCCTGG
Seq A exon
CATTCCCATTCACCACGCCTGTTCTGGTCTCCCAGCTGGAGCAAGGGGAACTGCCATGGGGCCTCGATCCCTGGGAACCTATGGGCAGGGAGGCTCTCAGAGGTATCTGTCCAG
Seq C2 exon
GGGATGAGGCCAGAACTGAGAAGGAAGGATTAACTCCAAAGGATCATGTGTCCAAAGAAACAGAGTCCTTCAGACTGATGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177842-'8-10,'8-7,11-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.244
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTGACCTTTGAGGATGTG
R:
CCCACCATCAGTCTGAAGGAC
Band lengths:
210-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development