BtaEX6093566 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018057 | ZNF619
Description
zinc finger protein 619 [Source:HGNC Symbol;Acc:HGNC:26910]
Coordinates
chr22:13377145-13380344:+
Coord C1 exon
chr22:13377145-13377271
Coord A exon
chr22:13377814-13377918
Coord C2 exon
chr22:13379265-13380344
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTCTTGTTGGAGTAGTGT
3' ss Score
3.75
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGCCAGTGACCTTTGAGGACGTGGCCGTGTACTTCACCCAGAACCAATGGGCCAGCCTGGACTCTGCGCAGAGGGCCCTGTATAGGGAGGTGATGCTGGAGAATTACAAAAATGTGGCTTCCCTTG
Seq A exon
TGTCTCCATTCCCCAGACCTGATCTGATCTCCCAGCTGGAGAGAGGGGAAGCTCCATGGGACCCCGATCCCTGGGAAGCAGAGGATTTGAGAGGCATCTGTCCAG
Seq C2 exon
GTGGTGAGAGGGGCATCAAGACAGAAGAGCCAGCGGTAGCGCAGCAAGCCTCCGAGGGCACAGAGGCCCACAGCAGGCCCGTGGGAGGGCTTCTCACAAACGTGTCTCAGCACTTGGATTTTGAAAACAAGGCAATGTGGCAGACTTTCAGTCTGAATCCCAATCTGATACTTCGAGGTGGCATGAAGTTCTACAAATGCAAAGAATGTGGGAAGATCTTCCGATATAACTCACAGCTCCTTCGGCATCAGAGTAGGCACACTGGGGAAAAGCCCTTCAAGTGCAAGGAGTGTGGCAAAGCTTTCAAGTCCAGCCAGAACTGTATCGTACATGAGAAAAATCACATTGGCAAAGGACCCTATGAATGTAAGGAGTGTGGCAAAGGTCTGAGTTCCAAAACCGCCTTGACCCAGCATCAGAGGATCCACACGGGGGAGAAGCTCTATAAATGTAAGGAGTGTGGCAAAGGTCTGAGTTCCAACACTGCCTTGACCCAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018057-'17-21,'17-18,19-21=AN
Average complexity
A_S
Mappability confidence:
91%=100=83%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.189
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=6.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTGTACTTCACCCAGAAC
R:
AGTCTGCCACATTGCCTTGTT
Band lengths:
249-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]