HsaEX6055275 @ hg38
Exon Skipping
Gene
ENSG00000172888 | ZNF621
Description
zinc finger protein 621 [Source:HGNC Symbol;Acc:HGNC:24787]
Coordinates
chr3:40525779-40574685:+
Coord C1 exon
chr3:40525779-40525864
Coord A exon
chr3:40530209-40530316
Coord C2 exon
chr3:40574383-40574685
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTTCTTCATGAAGTAG
3' ss Score
3.35
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTCTTGAGGATCTTGCTTGTCCAAACCCAGAAGACAGTGCATGAAGCCAGGGGACATCCGCCATGCTCCAAACAACTTGGCCTCAG
Seq A exon
TAGCGTTTCCATTCCCCAAACCTGCTCTGATCTCCCACCTGGAGAGAGGGGAAGCACCATGGGGCCCAGATCCCTGGGACACCGAGATTCTGAGAGGCATCAGTCAAG
Seq C2 exon
TTCTGGGTTTTCAGCCCCCTGAACTACGCATGTTAAGAAACATTTATAAGGAGTTATGTGTATTTATTATGCTTAAAGATTCAACTAGCCTGCCTTAAGGTACGTAATATCTCTCAACCCCAAATACCCTTTCTTCTCTTTGTTTAAAATGCATCTTTATTCATATACCCAATTTTTCTTTTTATTGGTATTAGATTTTGACTACAAGAGATTGGTCTCATTCCCAGGTTACCATGAATATGCCTGCATATCATCTTTTTTGTTCATTAAAAACATTTTTTCCCCATTTTAGTTTTCTATTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172888_MULTIEX1-3/4=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NA
Main Skipping Isoform:
ENST00000310898fB30858
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCATGCTCCAAACAACTTG
R:
ACCTGGGAATGAGACCAATCT
Band lengths:
257-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains