HsaEX6055275 @ hg19

Exon Skipping

Gene

ENSG00000172888 | ZNF621

Description

zinc finger protein 621 [Source:HGNC Symbol;Acc:24787]

Coordinates

chr3:40570810-40575017:+

Coord C1 exon

chr3:40570810-40570936

Coord A exon

chr3:40571700-40571807

Coord C2 exon

chr3:40573521-40575017

Length

108 bp

Sequences

Splice sites

3' ss Seq

TTTCTCTTTTCTTCATGAAGTAG

3' ss Score

3.35

5' ss Seq

AAGGTGAGT

5' ss Score

10.47

Exon sequences

Seq C1 exon

GAGTCAGTGACCTTTGAGGATGTGGCTGTTTACTTCACCCAGAATCAATGGGCCAGCCTCGACCCTGCGCAGAGGGCCCTGTACGGGGAGGTGATGCTGGAGAATTATGCAAATGTGGCTTCTCTGG

Seq A exon

TAGCGTTTCCATTCCCCAAACCTGCTCTGATCTCCCACCTGGAGAGAGGGGAAGCACCATGGGGCCCAGATCCCTGGGACACCGAGATTCTGAGAGGCATCAGTCAAG

Seq C2 exon

GTGGTGAGTCCTGGATCAAAAATGAAGGGCTAGTTATAAAGCAGGAAGCCTCTGAAGAAACAGAGTTGCACAGAATGCCAGTAGGAGGACTTCTCAGGAACGTTTCTCAGCACTTTGATTTTAAAAGGAAGGCACTGAAGCAGACTTTCAATCTAAATCCAAATCTGATACTTCGAGGTGGAATGAAGTTCTATGAATGTAAAGAATGTGGGAAAATCTTCCGATATAACTCAAAGCTTATTCGGCATCAGATGAGTCATACTGGGGAAAAGCCCTTTAAGTGTAAGGAGTGTGGCAAAGCTTTCAAGTCCAGCTATGATTGTATTGTACATGAGAAAAACCACATTGGAGAAGGGCCCTATGAATGTAAGGAGTGTGGCAAAGGTTTGAGTTCCAACACAGCCTTGACTCAACATCAGAGGATCCACACTGGAGAGAAACCCTATGAATGTAAAGAGTGTGGAAAGGCTTTCCGTAGGAGTGCGGCATACCTGCAGCAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000172888-'5-7,'5-6,7-7=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.020

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.3),PF097235=Zn-ribbon_8=WD(100=13.1),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF097235=Zn-ribbon_8=WD(100=13.7),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.0)

Main Inclusion Isoform:

ENSP00000340841