GgaEX6047124 @ galGal3

Exon Skipping

Gene

ENSGALG00000013355

Description

NA

Coordinates

chrE22C19W28_E50C23_random:153766-156046:-

Coord C1 exon

chrE22C19W28_E50C23_random:155863-156046

Coord A exon

chrE22C19W28_E50C23_random:155132-155242

Coord C2 exon

chrE22C19W28_E50C23_random:153766-155026

Length

111 bp

Sequences

Splice sites

3' ss Seq

CACTGTTTCTATCATTGAAGGTC

3' ss Score

7.4

5' ss Seq

CAGGTGAGG

5' ss Score

10.07

Exon sequences

Seq C1 exon

CTGCGAGCTGCTTCCCTGGGCCTTGGCTGTTTGCAGCAAGGAGCTCTTTGCTTGCAGGAGCCCGTGAGCTTTGTGGAGGTGGCCGTGTATTTCAGCAGGGAGGAGTGGGCGCTGCTGGACCCTGCGCAGCGAGCGCTGTACCGGGACGTGATGCTGGAGACGTATGAGTCTGTGGCCTCTCTGG

Seq A exon

GTCCGTTCCCAGCCCCCAAGCCTGTGGTGATCTCCCTACTTGAAGGAGGGGATGACCCCTGGATCCCAGATGTGCACAGCCCTGAGGCAGTATCAGGAGACTTCAGCCCAG

Seq C2 exon

CAGGAGCTGAGATCACAAATATAAAGGCGGATCTGCAGAAAAGCGGTGTGGCAGGAAGGCAGAGCAGCCGTGTCTCAGTGGGAAGAATTAGAAGGGATGTCCAGGGGTGCCTGGAGGAAGGAGAACACTTCAAGAAGCCCCTGGGAAGCCATCTGGGAAGGAGGCTGAGGAACCCTCTGGACTTTAGCACAGCTCAAAAGCAGACTGAAGATCCAAGGAGCAAGGAAGCGTGCCACAAGAAGCAGCTGAATCCACGTGTTTTGTGTAGGAAAAACTTTAAAAGGTATTCCAACCTTGTTAATCACCAGCGTGTGCGCTCTGGGGAGAGCTGGTACAAGTGCTCTGATTGTGGAAGGAGCTTCAGATGGAAATCCAAACTCACCCAGCATCAGCGCACTCACACAGGAGAGAGACCCTTTAAGTGTCTTGAGTGTGAGAAGAGCTTCAAAAGGACTTTCCAGCTCACTTTGCACCAACGTGTCCACACAGGAGAGAGGCCC

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000013355-'0-2,'0-1,4-2=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (No Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.211 C2=0.095

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=66.1)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF0009621=zf-C2H2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF097235=Zn-ribbon_8=WD(100=10.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=PU(55.6=3.6)

Main Inclusion Isoform:

ENSGALP00000008915

Main Skipping Isoform:

ENSGALP00000039573

Other Inclusion Isoforms:

NA

Other Skipping Isoforms:

ENSGALP00000021756

Associated events

Conservation

Human

(hg38)