HsaEX0073472 @ hg38
Exon Skipping
Gene
ENSG00000196378 | ZNF34
Description
zinc finger protein 34 [Source:HGNC Symbol;Acc:HGNC:13098]
Coordinates
chr8:144773114-144778164:-
Coord C1 exon
chr8:144778038-144778164
Coord A exon
chr8:144777458-144777577
Coord C2 exon
chr8:144773114-144774605
Length
120 bp
Sequences
Splice sites
3' ss Seq
AGTCCCTGTCTCCTTCCCAGGAG
3' ss Score
8.4
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GCCGAGGTGACCTTCGAGGACGTGGCTGTGTACCTCTCCCGGGAGGAATGGGGCCGCCTGGGCCCTGCTCAGAGGGGCCTCTACAGGGACGTGATGCTGGAGACCTACGGGAACCTAGTCTCACTGG
Seq A exon
GAGTAGGACCTGCAGGCCCCAAGCCTGGAGTGATCTCGCAGTTGGAGCGAGGGGATGAGCCCTGGGTCCTGGATGTTCAGGGCACCTCTGGGAAAGAGCACCTGAGAGTCAACAGCCCAG
Seq C2 exon
CTCTTGGGACCAGAACTGAGTACAAGGAGTTGACTTCACAGGAGACATTTGGTGAGGAAGATCCCCAGGGATCTGAGCCAGTAGAAGCCTGTGACCACATCAGTAAGTCAGAGGGGAGCCTGGAAAAGCTAGTGGAGCAGAGAGGCCCCAGGGCAGTCACACTGACCAACGGGGAGAGCAGCAGGGAGTCTGGGGGAAACCTCAGGTTGCTGTCAAGACCTGTTCCTGATCAGAGACCTCACAAATGTGATATATGTGAGCAAAGTTTTGAACAGAGATCATATCTCAACAACCATAAGCGTGTACACAGGTCAAAAAAAACAAATACAGTTCGTAACTCTGGGGAAATCTTCAGTGCAAACTTAGTTGTTAAAGAAGATCAGAAAATTCCTACTGGGAAAAAATTGCATTATTGCAGTTACTGTGGGAAAACATTCAGGTACAGTGCCAACCTTGTCAAGCATCAGCGGCTTCACACTGAAGAGAAGCCCTACAAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196378_MULTIEX1-7/7=6-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.012 A=0.699 C2=0.261
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0009621=zf-C2H2=WD(100=5.1),PF0013017=C1_1=WD(100=11.9),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF0013017=C1_1=WD(100=11.9),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTGGAGACCTACGGGAA
R:
GGTCTTGACAGCAACCTGAGG
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development