MmuEX6054648 @ mm10
Exon Skipping
Gene
ENSMUSG00000054967 | Zfp647
Description
zinc finger protein 647 [Source:MGI Symbol;Acc:MGI:3052806]
Coordinates
chr15:76910851-76917761:-
Coord C1 exon
chr15:76917635-76917761
Coord A exon
chr15:76917290-76917403
Coord C2 exon
chr15:76910851-76912175
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCTTCCCTTCTCATGAGCAGGAC
3' ss Score
5.64
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCCAAAGTGACCTTTGAGGATGTGGCTGTTCTGCTGTCTCAGGAGGAGTGGGCCCGCCTGGGCCCTGCTCAGCGGGGCCTCTACCGACACGTCATGATGGAGACCTACGGGAATGTAGTCTCACTGG
Seq A exon
GACTTCCAGGATCTAAGCCTGTTGTGATCTCCCAGCTGGAGCGAGGAGAAGACCCGTGGGTCCTGGATGGACAGGGAACCGAGCTGAGCCAGAGCCTGGGAAGTGACCACTCAG
Seq C2 exon
AATGCAAAGCCAAGGAAGAGAACCAAAACACAGACTTGAATGTGCCACCATTAATCTCAGACGAAGCATCAGCGACGCTGACGGAAACACCGCTGAGGAAGGTTGCTGAAGAACGTTACAAAACAGAACCGAAGGTCTGCCCCAGTCCAAAGCCCATTGGCCCCCAGAATGCCCACGGGTTGAACCCTAGTGTACCCGTTGCCCGACCCCAGACGGCTCCCAGTGTTGAGAGACCCTATATCTGCATTGAGTGTGGAAAGTGCTTTGGTCGGAGCTCCCATCTCCTTCAGCATCAGCGAATACACACTGGCGAGAAGCCCTACGTATGCCATGTATGCGGAAAGGCTTTCAGCCAGAGTTCCGTCCTGAGCAAGCACAGGCGGATCCACACGGGCGAGAAGCCCTACGAGTGTAACGAATGTGGGAAAGCCTTTCGCGTGAGTTCCGACCTTGCCCAGCACCACAAGATCCACACCGGAGAGAAGCCTCACGAGTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054967-'1-4,'1-2,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.667 C2=0.211
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGGATGTGGCTGTTCTGC
R:
GGCAGACCTTCGGTTCTGTTT
Band lengths:
255-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types