GgaEX6047633 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrUn_random:28964598-28966471:-
Coord C1 exon
chrUn_random:28966345-28966471
Coord A exon
chrUn_random:28965615-28965725
Coord C2 exon
chrUn_random:28964598-28965508
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCCTGTTTCTATCACTGAAGCTC
3' ss Score
5.71
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAGCCCGTGAGCTTTGCGGAGGTGGCCGTGTATTTCAGCAGGGAGGAGTGGGCGCTGCTGGACCCTGCGCAGCGAGCGCTCTACCGGGACGTGATGCTGGAGACGTACCAGTGCGTGGCCTGGCTGG
Seq A exon
CTCCACTTCCAGTCCCCAAACCCACGCTGATCTCCCTGCTGGAAGGAGGGGAAGACCCCTGGATCCCAGGTGTGTGTAGCCCTGAGGCCGTGCCAGGAGACCTGCACCCAG
Seq C2 exon
GAGGTGATGGGATCACAGATATAAAGGAGGATCTGCAGGAAAGTGGTGTGGCTGAAAAGCAGTGGGGTAGCGCCTGTGTGGAAGAAATTGGAAGAGATGTCCATGTGGGCTTTGAGCAGGCAGAGCGCTTCGAGAAGCCACTGGGAGGGCATGTGGGAAAGAGAGCAAGGAACCCTGTGGACTTCAGCGTGGGTCAAAAGCAGCCTGAAGACCACGGGAGCAAGAATGCGTGCCAGAAGAAAAAGCAGAATCCATGCACTGAGTGTGGGAAAAGCTTTAAAAGGTATTCCAACCTTGTTAATCACCAGCGCATACACTCTGGGAAGTGCCGGTTGAAGTGCTCTGATTGTGGAAAGAGCTACAAATGGAAATCTGAACTCATCAAGCACCAGCGCATCCACACAGGAGAGAGACCCTATAAGTGTCCTGAGTGTGAGAAAAGCTTCATGAGCAGAACTGGATTGAAGTACCACCAGCGCATCCACACAGAAGAGAGATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022304-'3-5,'3-4,6-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.316 C2=0.190
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0009621=zf-C2H2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTGATGCTGGAGACGTAC
R:
CTTCAGGCTGCTTTTGACCCA
Band lengths:
250-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]