MmuEX0053590 @ mm10
Exon Skipping
Gene
ENSMUSG00000059975 | Zfp74
Description
zinc finger protein 74 [Source:MGI Symbol;Acc:MGI:107784]
Coordinates
chr7:29935939-29938068:-
Coord C1 exon
chr7:29937942-29938068
Coord A exon
chr7:29937600-29937695
Coord C2 exon
chr7:29935939-29936043
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCCCCCACCCCCCAGGCC
3' ss Score
11.47
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGACTAGTGACGTTCAAAGACGTGGCCATTGATTTTACCCAAGAAGAATGGAAGCAACTGGATCCTACTCAGCGGAACCTATATAGGAATGTGATGCTAGAAAACTACAACAACTTAATCACAGTAG
Seq A exon
GCCCGCCACTCACCAAACCTGAAGTGATTTTCAAGTTGGAGCAAGAGGAAGAGCCTTGTGTGGTGGAGAGAGAAGTGCTGTGGAGACCCTGTCCAG
Seq C2 exon
GGGAGATTTTGGGAATTGACGAGCACCAGAAAATCCAGGACGGACAAGTTTTCGAGGGAATAGTGGTGACGAGTGAAGCCAGCGAATGTCCGGAGGAATTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059975-'9-15,'9-11,10-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.021
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCTACTCAGCGGAACCT
R:
AATTCCTCCGGACATTCGCTG
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types