HsaEX6094716 @ hg38
Exon Skipping
Gene
ENSG00000189042 | ZNF567
Description
zinc finger protein 567 [Source:HGNC Symbol;Acc:HGNC:28696]
Coordinates
chr19:36712386-36721327:+
Coord C1 exon
chr19:36712386-36712512
Coord A exon
chr19:36712781-36712867
Coord C2 exon
chr19:36718948-36721327
Length
87 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTTTTCACTTTTCAGGGT
3' ss Score
11.72
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGATCAGTGTCTTTCAATGATGTGACTGTGGACTTCACTCAGGAGGAGTGGCAGCACCTGGATCATGCTCAGAAGACTCTATATATGGATGTGATGTTGGAAAACTATTGCCACCTCATCTCTGTGG
Seq A exon
GGTGTCACATGACCAAACCTGATGTGATCCTCAAGTTGGAACGAGGAGAAGAGCCATGGACATCATTTGCAGGTCATACCTGCTTGG
Seq C2 exon
AAGAAAACTGGAAAGCTGAAGACTTTTTAGTGAAATTCAAGGAACACCAAGAGAAGTATTCTAGATCAGTTGTAAGCATCAACCACAAAAAACTGGTGAAGGAGAAGAGTAAAATATATGAAAAGACATTTACTCTAGGCAAAAACCCTGTGAATTCAAAAAATCTACCTCCTGAATATGATACTCATGGAAGGATTTTGAAAAATGTTTCAGAATTAATCATCAGTAATCTAAATCCTGCAAGAAAGAGACTTAGTGAGTATAATGGATATGGGAAATCACTCCTGAGTACTAAACAAGAGACTACTCATCCTGAAGTCAAATCCCATAATCAAAGTGCCAGAGCTTTCAGTCATAATGAAGTTCTTATGCAGTATCAGAAAACGGAAACTCCAGCACAGTCATTTGGATATAATGACTGTGAGAAATCATTCCTTCAAAGGGGAGGCCTGATTACACATAGTAGACCTTACAAAGGAGAAAACCCATCTGTATATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189042-'14-20,'14-18,17-20
Average complexity
S
Mappability confidence:
90%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.180
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF127602=Zn_Tnp_IS1595=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF097235=Zn-ribbon_8=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAGCACCTGGATCATG
R:
TGTGGTTGATGCTTACAACTGA
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains