BtaEX6081942 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000002398 | ZNF567

Description

zinc finger protein 567 [Source:HGNC Symbol;Acc:HGNC:28696]

Coordinates

chr18:47089349-47095722:-

Coord C1 exon

chr18:47095596-47095722

Coord A exon

chr18:47095252-47095338

Coord C2 exon

chr18:47089349-47091718

Length

87 bp

Sequences

Splice sites

3' ss Seq

CCAAATCTTCCCTTAATCAGGGT

3' ss Score

6.23

5' ss Seq

TAGGTGAGT

5' ss Score

8.83

Exon sequences

Seq C1 exon

GGATCAGTGTCATTCAAAGATGTGACTGTGGACTTCAGTCAGGAGGAGTGGCAGCACCTGGATCCTGCTCAGAAGACACTCTACATGGATGTAATGTTGGAAAACTATTGCCATCTCATTTCTGTAG

Seq A exon

GGTGTCACATGACCAAGCCTGATGTGATCCTCAAATTGGAACGAGGAGAAGAACCATGGACATCATTTAAAGGTCATACCTGCTTAG

Seq C2 exon

AAGAAAACTGGAAAGCTGAAGACTTTTTATTGAAATTCAAGGAACAGCAAGATAAATATTCTAGATCAGTTATATTAATCAACCACAAAAAGCTGGTTAACGAGAACGGTAGTACATGTGAAAAGACACTTACTTTGAGTAAAAACCCTATTAATTCAAAAAAGCTACCTCCTGAATATGACACTCGTGAAAAGATTTTAAAAAATGTTTCAGAATTAATCATCAGTAATCTAAGTCCTACAAGAAGGAGACTTAGTGAGTGTAATGGGTATGGGAAATCACTCCTCAATACTAAACCAGAGACAGCTCACTCTGGAGTCAAATCTCATAATCAATGTGGGAGGACCATCAGTCATAATGAAAAGATCACACAATATCATAAGATGGAAACTCCAGCACAGTCATTTGAATATAATGACTGTGAGAAAGCCTTTTTAAAAAGAGGAGGCCCAGTTACACATAGTAGAACTTATAGAAGGGGAAACACATCTGATTATAAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000002398-'5-11,'5-10,6-11=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.188

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF0013017=C1_1=WD(100=11.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF127602=Zn_Tnp_IS1595=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF097235=Zn-ribbon_8=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5)

Main Inclusion Isoform:

ENSBTAP00000018075