HsaEX0074070 @ hg19
Exon Skipping
Gene
ENSG00000177842 | ZNF620
Description
zinc finger protein 620 [Source:HGNC Symbol;Acc:28742]
Coordinates
chr3:40547795-40553087:+
Coord C1 exon
chr3:40547795-40547867
Coord A exon
chr3:40550147-40550265
Coord C2 exon
chr3:40552961-40553087
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTTTTTCCTTAGAGA
3' ss Score
10.91
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTTCACTTCTCCGAACCCTGAGGCAGTGTGTGAAGCTGGGACGCCAGCCATGTTCCAGACCGCTTGGCGCCAG
Seq A exon
AGACAATCTTACTCTGTCTCCCAGGCTGAGTGCAGTGGTGCAATCACAGCTCACTGCAGCCTCCACCTCCCAGGCCTAAGTGATCCTCCCAAGGAGTTGAGACTAAGTTGAGACTACAG
Seq C2 exon
GAACCAGTGACCTTTGAGGATGTGGCTGTGTACTTCACCCAGAATGAATGGGCCAGCCTGGACTCTGTGCAGAGGGCCCTGTACAGGGAAGTGATGCTGGAGAATTATGCAAATGTGGCTTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177842-'2-4,'2-2,4-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.139 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTTCTCCGAACCCTGAGG
R:
CCAGGGAAGCCACATTTGCAT
Band lengths:
198-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)