MmuEX0053122 @ mm10
Exon Skipping
Gene
ENSMUSG00000022526 | Zfp251
Description
zinc finger protein 251 [Source:MGI Symbol;Acc:MGI:1918841]
Coordinates
chr15:76869807-76871435:-
Coord C1 exon
chr15:76870653-76871435
Coord A exon
chr15:76870282-76870414
Coord C2 exon
chr15:76869807-76869920
Length
133 bp
Sequences
Splice sites
3' ss Seq
CCGGCATGTTGTCATTCCAGGGT
3' ss Score
6.02
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GGCGACGCGGCCTTGGGAGGCATGGATGTGAAGGACGATGACTTTTAAGTTTTTGCCCAGAGCTAGCCCTCGCCGCCTGTGTGTCCACTCACACCCGCAACCCGGTGAGGCCTGTCGCGGCGAGGCCCGTAGCCTTTTCCAGGCTGGCCCTCTAAAGCTGAGGTGGTGCTATGCGTCCACTCTGGGTGTCCTGGCGCATGGCTGGAACTGCCAACTCGCGCCGTGCATGGGGCAGTTCTCAGTTTGGATAGCGGCACGGGACAGGTCACACGCCGGCACTCGCGGCTTTAGGACACTCCAGAAGGCCACTTCCGAAGCAAGGTCTGTCGTCGTCTTCTGACCATCCGGCCATTGCCCCAGCTGAATGGGGCTGAGTTTGTCTGTTTTCTCTCCCTGAGAGTAAGTTAGGGAGACCCCAGGCCGGGGCTGCCTCCTGCCTACCACGGATTCCAAGGTGGTTCACAGCCCAGATGGCTGACAAGTCCTGCTCCCCGACTCCG
Seq A exon
GGTGAGACGCCTCTGACCTTCCAAGATGTGGCTGTGTACTTCTCCAGGGCAGAAGGGCAGCAGCTTAGCCCCCAGGAGCGGGCGCTGTACCGGGATGTGATGTTGGAGAACTATGGGAACGTGGCTTCACTGG
Seq C2 exon
GATTCCCAGGCCCTAAGCCAGAACTGATCTCCCAGCTGGAGCAAGAGGAGGAGCTGTGGGTCCTGGATCTTCTCGGGGCTGAAGAACCAGAAGTCTTGAGACGTTGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022526_MULTIEX1-2/4=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.089 C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=91.1)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTCGTCGTCTTCTGACCA
R:
CGAGAAGATCCAGGACCCACA
Band lengths:
253-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types