BtaEX0041505 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046866 | ZNF707
Description
zinc finger protein 707 [Source:HGNC Symbol;Acc:HGNC:27815]
Coordinates
chr14:2281340-2282361:+
Coord C1 exon
chr14:2281340-2281372
Coord A exon
chr14:2281740-2281866
Coord C2 exon
chr14:2282248-2282361
Length
127 bp
Sequences
Splice sites
3' ss Seq
CAGAACCAGTGTTGTTTCAGGGC
3' ss Score
2.68
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ATGGCGGGCAGCCCCCCGGCCGCCTGGCCCCAG
Seq A exon
GGCCTCCTGACTTTTGGGGACGTGGCTGTGCACTTCACCCAGGAAGAAGGGGCGCGTCTGGATGCTGGGCAGAGGACCCTGTATAGAGACGTGATGCTGGAGACTTACAGGAACCTGGTCTCTCTGG
Seq C2 exon
GAGTTCCAGAATCCAAGCCAGATCTCATCTCCCAACTGGAGCAAGGAAGGGAGCCCTGGGGCTCAGACCTGCTGGGGGCCCAGGAAGCAGAGACTTCGGGAAATGCCGGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046866_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.109 C2=0.786
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development