BtaINT0166001 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046866 | ZNF707
Description
zinc finger protein 707 [Source:HGNC Symbol;Acc:HGNC:27815]
Coordinates
chr14:2281340-2281866:+
Coord C1 exon
chr14:2281340-2281372
Coord A exon
chr14:2281373-2281739
Coord C2 exon
chr14:2281740-2281866
Length
367 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CAGAACCAGTGTTGTTTCAGGGC
3' ss Score
2.68
Exon sequences
Seq C1 exon
ATGGCGGGCAGCCCCCCGGCCGCCTGGCCCCAG
Seq A exon
GTGAGCGCTCCTGCCCCCGGGACCTGGGCTCCTTGCCTCCCAGAAGATCTTTCCTCGGAGCCCGCTTCACTTGGGACCCTGAGTCCCAGGTCCTCTCCAGGACGGGGCCTCACAGGGGCTTCCCTTGCCCCTCCGCGTTGTTCCCCAGGGCGTTCCGGAGGCTGCGGGACACTCATCAGGAAAGGCGGTACTGAGCAGGTTGGGGTATGGATAGGTTGGGTTGACGGTTGTCATTACGGGTTCCCTGGCAAGCAGGGTACCTTGAGATGGAGTCCAGGGGTCCCACATGCCTGCTGGTGAGCCATCTGCCTCCTCTGCCTTGAATCCTGATGTGCTGACTCCATGGGCAGAACCAGTGTTGTTTCAG
Seq C2 exon
GGCCTCCTGACTTTTGGGGACGTGGCTGTGCACTTCACCCAGGAAGAAGGGGCGCGTCTGGATGCTGGGCAGAGGACCCTGTATAGAGACGTGATGCTGGAGACTTACAGGAACCTGGTCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046866:ENSBTAT00000063252:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development